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The map label for this gene is ydcR [C]

Identifier: 113476123

GI number: 113476123

Start: 3865117

End: 3866100

Strand: Direct

Name: ydcR [C]

Synonym: Tery_2504

Alternate gene names: 113476123

Gene position: 3865117-3866100 (Clockwise)

Preceding gene: 113476117

Following gene: 113476124

Centisome position: 49.87

GC content: 35.87

Gene sequence:

>984_bases
ATGATTGATTTTCAAATTCAAGCAGATAATGATATTCCCGCATCAAAGCAATTATATAGTCAAATTAGGTTAGCAATTGC
TTCCCGTAAATTTCCTCCTGGCCATCGATTACCTAGTACCCGTCAACTTGCGATGCAAACTGGGTTACATCGCAACACTA
TAAGTAAAGTATACCGTCAACTAGAAGATACCGGTCTAGTAGAAGCTCAAGCAGGTTCTGGTATTTATGTGAGAAGTCAA
GGAAATGAGGGAGGGTCAAACTTAAAGTCTCTCACCTTCGATAAATATCCAAATGCCAGTAACATAGTCAAGAGTAGCTT
AGATGAATTATTATCCCAAGGTTCTAGTTTAAATGAAGCTAGGGAAATGCTCCTGAGTGAGATTGACTGGCGATATCGTT
GTAGTGCTAGAGTATTAGTCACAGCTCCGTTTCATGACATTGGCATTGGAAAGTTGATGACCAAAGAGTTAGAACAAGCT
CTGAATATTGCTGTAGAGTTGGTTCCCATCGAAGAACTAAATGAGGTTATAAACCAAATATCTGCTGGCACAATTATCAC
AAGTCGTTATTTTATTAAGGAAGCTGAAGAAATAGCTGTTCTGAAACCTGTCAGGGTTATACCAATTGATACATATGATT
ATGCTCAAGAACTTCAATTGCTAAATACATTACCCAAAGGAAGTTACTGTGGTTTTGTTAGTCTCAGTTCAGGTGTTTTA
AGAGCTGCAGAATTAATTATTCATGGTTGGCGCGGAAATGATATAGTTTTTATGCCGGCTATACATACAGAAATCGATAA
AATAAATGCTATAGTGCGGGTAGCTAGAATAATTGTCTGTGATAGATTTAGCTTTGATATACTTAAAGATGTCTTACAAA
AAAATAGGGAAGATATTATTCGCCCACCAGAAATTATATGTATTGAAAATTATATTGTTATAAATTCAATTAATCTATTG
AAACGGGAGTTAGGTTTAGGTTAA

Upstream 100 bases:

>100_bases
TAGCATTACACTTAACAAGCCAAGATAAATTATTAGCTTTTAAATTTTGAGTTTTGACTTAAGCGTAGCGCTATTATTGC
TATCCACTGGAGCTTAGGTA

Downstream 100 bases:

>100_bases
CTGCAAGTATTCAACAGTCAGCTATCAGCTATTAATTAAGGTCTGCTAAAAAAGTTTTATGAGTGAGGCTAGGAGTTAAG
GGTAGGTAAGGACTTTGTCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator GntR Family; Transcriptional Regulator GntR Family Protein; GntR Family Transcriptional Regulatory Protein; GntR Family Transcriptional Repressor

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MIDFQIQADNDIPASKQLYSQIRLAIASRKFPPGHRLPSTRQLAMQTGLHRNTISKVYRQLEDTGLVEAQAGSGIYVRSQ
GNEGGSNLKSLTFDKYPNASNIVKSSLDELLSQGSSLNEAREMLLSEIDWRYRCSARVLVTAPFHDIGIGKLMTKELEQA
LNIAVELVPIEELNEVINQISAGTIITSRYFIKEAEEIAVLKPVRVIPIDTYDYAQELQLLNTLPKGSYCGFVSLSSGVL
RAAELIIHGWRGNDIVFMPAIHTEIDKINAIVRVARIIVCDRFSFDILKDVLQKNREDIIRPPEIICIENYIVINSINLL
KRELGLG

Sequences:

>Translated_327_residues
MIDFQIQADNDIPASKQLYSQIRLAIASRKFPPGHRLPSTRQLAMQTGLHRNTISKVYRQLEDTGLVEAQAGSGIYVRSQ
GNEGGSNLKSLTFDKYPNASNIVKSSLDELLSQGSSLNEAREMLLSEIDWRYRCSARVLVTAPFHDIGIGKLMTKELEQA
LNIAVELVPIEELNEVINQISAGTIITSRYFIKEAEEIAVLKPVRVIPIDTYDYAQELQLLNTLPKGSYCGFVSLSSGVL
RAAELIIHGWRGNDIVFMPAIHTEIDKINAIVRVARIIVCDRFSFDILKDVLQKNREDIIRPPEIICIENYIVINSINLL
KRELGLG
>Mature_327_residues
MIDFQIQADNDIPASKQLYSQIRLAIASRKFPPGHRLPSTRQLAMQTGLHRNTISKVYRQLEDTGLVEAQAGSGIYVRSQ
GNEGGSNLKSLTFDKYPNASNIVKSSLDELLSQGSSLNEAREMLLSEIDWRYRCSARVLVTAPFHDIGIGKLMTKELEQA
LNIAVELVPIEELNEVINQISAGTIITSRYFIKEAEEIAVLKPVRVIPIDTYDYAQELQLLNTLPKGSYCGFVSLSSGVL
RAAELIIHGWRGNDIVFMPAIHTEIDKINAIVRVARIIVCDRFSFDILKDVLQKNREDIIRPPEIICIENYIVINSINLL
KRELGLG

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36634; Mature: 36634

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFQIQADNDIPASKQLYSQIRLAIASRKFPPGHRLPSTRQLAMQTGLHRNTISKVYRQ
CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
LEDTGLVEAQAGSGIYVRSQGNEGGSNLKSLTFDKYPNASNIVKSSLDELLSQGSSLNEA
HHHCCCEEEECCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
REMLLSEIDWRYRCSARVLVTAPFHDIGIGKLMTKELEQALNIAVELVPIEELNEVINQI
HHHHHHHCCCCEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHH
SAGTIITSRYFIKEAEEIAVLKPVRVIPIDTYDYAQELQLLNTLPKGSYCGFVSLSSGVL
CCCEEEEHHHHHHHHHHHHEECCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEEHHHHHH
RAAELIIHGWRGNDIVFMPAIHTEIDKINAIVRVARIIVCDRFSFDILKDVLQKNREDII
HHHHHHEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCC
RPPEIICIENYIVINSINLLKRELGLG
CCCCEEEEECEEEEEHHHHHHHHHCCC
>Mature Secondary Structure
MIDFQIQADNDIPASKQLYSQIRLAIASRKFPPGHRLPSTRQLAMQTGLHRNTISKVYRQ
CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
LEDTGLVEAQAGSGIYVRSQGNEGGSNLKSLTFDKYPNASNIVKSSLDELLSQGSSLNEA
HHHCCCEEEECCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
REMLLSEIDWRYRCSARVLVTAPFHDIGIGKLMTKELEQALNIAVELVPIEELNEVINQI
HHHHHHHCCCCEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHH
SAGTIITSRYFIKEAEEIAVLKPVRVIPIDTYDYAQELQLLNTLPKGSYCGFVSLSSGVL
CCCEEEEHHHHHHHHHHHHEECCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEEHHHHHH
RAAELIIHGWRGNDIVFMPAIHTEIDKINAIVRVARIIVCDRFSFDILKDVLQKNREDII
HHHHHHEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCC
RPPEIICIENYIVINSINLLKRELGLG
CCCCEEEEECEEEEEHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA