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The map label for this gene is cpcG [H]

Identifier: 113476106

GI number: 113476106

Start: 3831730

End: 3832440

Strand: Direct

Name: cpcG [H]

Synonym: Tery_2486

Alternate gene names: 113476106

Gene position: 3831730-3832440 (Clockwise)

Preceding gene: 113476105

Following gene: 113476114

Centisome position: 49.44

GC content: 38.54

Gene sequence:

>711_bases
ATGACAATTCCTTTACTTTACTATCCACTCTCTAGTCAAAATCATCGGGTTCAAGGATTTGAGGTTCCAGGAGATGAACA
TCCCAGACAGCAAACTCTGGACAAGCTACCAACTGGTACAGAGATAGATGAAATCATCGGGGCAGCCTATCGGCAAATTT
TCAACGAGCAGCAAACAATTACAGCTCATCAACAGCTTTATTTAGAGTCTCAACTTCGCAATGGTCAGATTACAATTAAG
GATTTCATGCGAGGTTTACTGCTTTCAGACTCATTCCGGCGACTGATTTATGATACTAATAGTAACTATCGTTGTGTTGA
ACTATGTATTCAAAGAGTTTTAGGACGTCCCGTCTATAACAATAAAGAGAAACTTAGTTGGTCTATTATATTGGCAACGA
AAGGACTCCAAGGTTTTGTTAATGCCTTGTTAGACAGCGAAGAATATGAAAAACACTTTGGCTATAATTGTGTTCCTTAC
CAACGTCGGCGGATTTTGCCCCAGCGCATTAAAGGGGAGTTACCCTTTGCTCGGATGGCTCGTTATGATAGTAATTATCT
CAAACAGTTATATCGAACAGGGCAACTACGGAAGTTTAGTGAAGTAGTTGATGAAAGTGTTTATGTTTATCGCAAAGCCC
TCATCTTTTTGTCTATATTATCTTTAGCAGTCTTATCTATTACTCTGGTTTTAGTTTTTTCAGCTAAATAA

Upstream 100 bases:

>100_bases
GATGGCAGTATAAATAATAAGCCACTAGCCAAAATTGAGCAGTTTTAGTTTTCATTTTTCGCTAACATTAAGTTATTTTC
CAACAACTCTACTAACTAAA

Downstream 100 bases:

>100_bases
TATCAACATGACTTACCCATTGGCATATCCTGACCGTGAGGGCGAATGCCATAAAGCCCCTACGGTTGAAGCTAGGTCAA
GCATGGGTAAGTTTTAATAA

Product: phycobilisome linker polypeptide

Products: NA

Alternate protein names: L-RC 28.5 [H]

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MTIPLLYYPLSSQNHRVQGFEVPGDEHPRQQTLDKLPTGTEIDEIIGAAYRQIFNEQQTITAHQQLYLESQLRNGQITIK
DFMRGLLLSDSFRRLIYDTNSNYRCVELCIQRVLGRPVYNNKEKLSWSIILATKGLQGFVNALLDSEEYEKHFGYNCVPY
QRRRILPQRIKGELPFARMARYDSNYLKQLYRTGQLRKFSEVVDESVYVYRKALIFLSILSLAVLSITLVLVFSAK

Sequences:

>Translated_236_residues
MTIPLLYYPLSSQNHRVQGFEVPGDEHPRQQTLDKLPTGTEIDEIIGAAYRQIFNEQQTITAHQQLYLESQLRNGQITIK
DFMRGLLLSDSFRRLIYDTNSNYRCVELCIQRVLGRPVYNNKEKLSWSIILATKGLQGFVNALLDSEEYEKHFGYNCVPY
QRRRILPQRIKGELPFARMARYDSNYLKQLYRTGQLRKFSEVVDESVYVYRKALIFLSILSLAVLSITLVLVFSAK
>Mature_235_residues
TIPLLYYPLSSQNHRVQGFEVPGDEHPRQQTLDKLPTGTEIDEIIGAAYRQIFNEQQTITAHQQLYLESQLRNGQITIKD
FMRGLLLSDSFRRLIYDTNSNYRCVELCIQRVLGRPVYNNKEKLSWSIILATKGLQGFVNALLDSEEYEKHFGYNCVPYQ
RRRILPQRIKGELPFARMARYDSNYLKQLYRTGQLRKFSEVVDESVYVYRKALIFLSILSLAVLSITLVLVFSAK

Specific function: Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 27510; Mature: 27379

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIPLLYYPLSSQNHRVQGFEVPGDEHPRQQTLDKLPTGTEIDEIIGAAYRQIFNEQQTI
CCCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHH
TAHQQLYLESQLRNGQITIKDFMRGLLLSDSFRRLIYDTNSNYRCVELCIQRVLGRPVYN
HHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
NKEKLSWSIILATKGLQGFVNALLDSEEYEKHFGYNCVPYQRRRILPQRIKGELPFARMA
CCCCEEEEEEEECCCHHHHHHHHHCHHHHHHHCCCCCCCHHHHHCCHHHHCCCCCHHHHH
RYDSNYLKQLYRTGQLRKFSEVVDESVYVYRKALIFLSILSLAVLSITLVLVFSAK
HCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TIPLLYYPLSSQNHRVQGFEVPGDEHPRQQTLDKLPTGTEIDEIIGAAYRQIFNEQQTI
CCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHH
TAHQQLYLESQLRNGQITIKDFMRGLLLSDSFRRLIYDTNSNYRCVELCIQRVLGRPVYN
HHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
NKEKLSWSIILATKGLQGFVNALLDSEEYEKHFGYNCVPYQRRRILPQRIKGELPFARMA
CCCCEEEEEEEECCCHHHHHHHHHCHHHHHHHCCCCCCCHHHHHCCHHHHCCCCCHHHHH
RYDSNYLKQLYRTGQLRKFSEVVDESVYVYRKALIFLSILSLAVLSITLVLVFSAK
HCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2164365 [H]