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The map label for this gene is psbC [H]

Identifier: 113476105

GI number: 113476105

Start: 3828573

End: 3830141

Strand: Direct

Name: psbC [H]

Synonym: Tery_2485

Alternate gene names: 113476105

Gene position: 3828573-3830141 (Clockwise)

Preceding gene: 113476104

Following gene: 113476106

Centisome position: 49.4

GC content: 43.4

Gene sequence:

>1569_bases
ATGAGTGTAACTCAATCAACAAATCCATTAAGGTTTTTAGGATTTTCCACAGACAATAATGTTGATGTTACGAACTATGT
TGGTAATTCCCAAGAACCCTATTCCTGGTGGGCAGGTAATTTTCGCTTTGTTGACCTATCTGGGAAATTATTAGGCGCTC
ACATTGCCCATGCCGGCTTAATTGTACTCTGGGCCGGTGCTATGACTCTATTTGAGTTATCCAGATTCGACCCTAGTTTA
CCTATGTACAACCAGGGGCTAATTTTGCTTCCCCACATGGCTACTCTGGGTTTAGGAGTTGGAGCAAATGGGGAAATTAT
CGATACCTATCCTTATTTTGCTATTGGTGTTGTTCACCTAGTTAGTTCAGCAATTTTAGGAGCTGGTGGGATTTACCATG
CCGTACTTGGACCTGAGAAACTCGACGAAAAAGGATTTGGCTATCAGTGGAATGATGGTAACAAAATGACTACTATTCTT
GGCATTCATCTAGTACTACTAGGGATTGGAGCATTGATGCTGGTAGTCAAAGCCGTTTATGGTAGTGGTTTGTACGATCC
GGCGATCGCCAATGTACGAGTGATTACTGAACCAACTCTGAATCCACAAACTATCTTCGGGTACCTGGTAGGTATCACTC
CTGATGGCTGGACATTGAAGGGAATGGCTGCAGTCAATTCTTTAGAAGATGTAGTAGGCGGTCATATATGGATTGGCGTC
ATCTGCATTTTAGGAGGTTTGTGGCATATTAATACTGCCCCTACTAAATGGGCTAAAGGGTTATTTGTTTGGTCCGGAGA
AGCATATCTTGCCTACAGTCAGGCAGCTCTAGCTTACATGGGCTTTTTCGCAGCTTACTTTGTCTGGGTAAATGATACAG
TTTATCCCTCAGTATTTTATGGTCCTGTGGGAGTGACTAACGTTGATGGAACTATTACTCCTCGTACCTGGTTAATGTTG
TTCCAACTTATTTTTGCCTGTCTGCTACTGGCGGGTCACTTTTGGCATGGCCTCAGATCCAGAGCGATCGCTAGTGGATT
TGTCTTCAGTAGTCTGAAATTCAATCCCGGTGCTCTCTATGGAGACGCTCAATTCAATAACGAATCCCTAGTTACAGGTA
TTGTGCAGCCGTACCAAAACAACCCCCAGTTGGGTAACCTGGCAACCCCAATTAACTCCAGTCAGCTAACTCTAACTTGG
GTCAGAAACTTGCCAATTTATCGCAATGGTTTATCTCCCATTGCACGAGGGTTAGAAATTGGCATGGCTCATGGATACCT
GTTATTAGGACCGTTCTTGAAACTCGGACCATTGCGCAATACTGACCAAGCTCTTTTAGCTGGAGGTGGTAGTGCATCAG
GATTAGTAGTAATTTTAAGTATCTGTCTGTTCGTTTATGGGATGGCAGTGTTTCAAGGTTCAAGTAAGCCAGTGGGTGTT
TTACCAGAAAACCTACAAACTTATGGGCATTGGAGCATGTTTACATCTGGTTTCTTGATAGGCGGAATAGGTGGTGTAAT
TTTTGCCTGCTTTATTCTGTTAGAAATTGGCCGAGCAGGAATTGTTTGA

Upstream 100 bases:

>100_bases
TCTTCCTACAAGGACACATATTCCATGCCTTACGAGCAGCAGGATATAGCTTTATCGAAGGCAGAGTCATTAATTCTACA
AGAGGTCAAGTAAGTTAGTT

Downstream 100 bases:

>100_bases
GCAAAGAAAACATCAGCTAGAAGACAGGAAGCAGTAAGGGTTTATCCTGACACCGGAGGTACAATATCCTGACGAGCAAA
CATAGCAGGGTTTGAAATGA

Product: photosystem antenna protein-like protein

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 522; Mature: 521

Protein sequence:

>522_residues
MSVTQSTNPLRFLGFSTDNNVDVTNYVGNSQEPYSWWAGNFRFVDLSGKLLGAHIAHAGLIVLWAGAMTLFELSRFDPSL
PMYNQGLILLPHMATLGLGVGANGEIIDTYPYFAIGVVHLVSSAILGAGGIYHAVLGPEKLDEKGFGYQWNDGNKMTTIL
GIHLVLLGIGALMLVVKAVYGSGLYDPAIANVRVITEPTLNPQTIFGYLVGITPDGWTLKGMAAVNSLEDVVGGHIWIGV
ICILGGLWHINTAPTKWAKGLFVWSGEAYLAYSQAALAYMGFFAAYFVWVNDTVYPSVFYGPVGVTNVDGTITPRTWLML
FQLIFACLLLAGHFWHGLRSRAIASGFVFSSLKFNPGALYGDAQFNNESLVTGIVQPYQNNPQLGNLATPINSSQLTLTW
VRNLPIYRNGLSPIARGLEIGMAHGYLLLGPFLKLGPLRNTDQALLAGGGSASGLVVILSICLFVYGMAVFQGSSKPVGV
LPENLQTYGHWSMFTSGFLIGGIGGVIFACFILLEIGRAGIV

Sequences:

>Translated_522_residues
MSVTQSTNPLRFLGFSTDNNVDVTNYVGNSQEPYSWWAGNFRFVDLSGKLLGAHIAHAGLIVLWAGAMTLFELSRFDPSL
PMYNQGLILLPHMATLGLGVGANGEIIDTYPYFAIGVVHLVSSAILGAGGIYHAVLGPEKLDEKGFGYQWNDGNKMTTIL
GIHLVLLGIGALMLVVKAVYGSGLYDPAIANVRVITEPTLNPQTIFGYLVGITPDGWTLKGMAAVNSLEDVVGGHIWIGV
ICILGGLWHINTAPTKWAKGLFVWSGEAYLAYSQAALAYMGFFAAYFVWVNDTVYPSVFYGPVGVTNVDGTITPRTWLML
FQLIFACLLLAGHFWHGLRSRAIASGFVFSSLKFNPGALYGDAQFNNESLVTGIVQPYQNNPQLGNLATPINSSQLTLTW
VRNLPIYRNGLSPIARGLEIGMAHGYLLLGPFLKLGPLRNTDQALLAGGGSASGLVVILSICLFVYGMAVFQGSSKPVGV
LPENLQTYGHWSMFTSGFLIGGIGGVIFACFILLEIGRAGIV
>Mature_521_residues
SVTQSTNPLRFLGFSTDNNVDVTNYVGNSQEPYSWWAGNFRFVDLSGKLLGAHIAHAGLIVLWAGAMTLFELSRFDPSLP
MYNQGLILLPHMATLGLGVGANGEIIDTYPYFAIGVVHLVSSAILGAGGIYHAVLGPEKLDEKGFGYQWNDGNKMTTILG
IHLVLLGIGALMLVVKAVYGSGLYDPAIANVRVITEPTLNPQTIFGYLVGITPDGWTLKGMAAVNSLEDVVGGHIWIGVI
CILGGLWHINTAPTKWAKGLFVWSGEAYLAYSQAALAYMGFFAAYFVWVNDTVYPSVFYGPVGVTNVDGTITPRTWLMLF
QLIFACLLLAGHFWHGLRSRAIASGFVFSSLKFNPGALYGDAQFNNESLVTGIVQPYQNNPQLGNLATPINSSQLTLTWV
RNLPIYRNGLSPIARGLEIGMAHGYLLLGPFLKLGPLRNTDQALLAGGGSASGLVVILSICLFVYGMAVFQGSSKPVGVL
PENLQTYGHWSMFTSGFLIGGIGGVIFACFILLEIGRAGIV

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 56085; Mature: 55954

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTQSTNPLRFLGFSTDNNVDVTNYVGNSQEPYSWWAGNFRFVDLSGKLLGAHIAHAGL
CCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEECCCEEEEEECCCHHHHHHHHHHH
IVLWAGAMTLFELSRFDPSLPMYNQGLILLPHMATLGLGVGANGEIIDTYPYFAIGVVHL
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHCCCCCCCCCEEECCCHHHHHHHHH
VSSAILGAGGIYHAVLGPEKLDEKGFGYQWNDGNKMTTILGIHLVLLGIGALMLVVKAVY
HHHHHHCCCCCEEECCCHHHHCCCCCCEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
GSGLYDPAIANVRVITEPTLNPQTIFGYLVGITPDGWTLKGMAAVNSLEDVVGGHIWIGV
CCCCCCCCCCCEEEEECCCCCHHEEEEEEEEECCCCCEEEHHHHHHHHHHHHCCHHHHHH
ICILGGLWHINTAPTKWAKGLFVWSGEAYLAYSQAALAYMGFFAAYFVWVNDTVYPSVFY
HHHHCCCEECCCCCCHHHCEEEEECCCEEEEHHHHHHHHHHHHHHHHHEECCCCCCCEEE
GPVGVTNVDGTITPRTWLMLFQLIFACLLLAGHFWHGLRSRAIASGFVFSSLKFNPGALY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEE
GDAQFNNESLVTGIVQPYQNNPQLGNLATPINSSQLTLTWVRNLPIYRNGLSPIARGLEI
CCCCCCCCHHEEHHHCCCCCCCCCCCEECCCCCCEEEEEEEECCCCEECCHHHHHHHHHH
GMAHGYLLLGPFLKLGPLRNTDQALLAGGGSASGLVVILSICLFVYGMAVFQGSSKPVGV
HHCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
LPENLQTYGHWSMFTSGFLIGGIGGVIFACFILLEIGRAGIV
CCHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SVTQSTNPLRFLGFSTDNNVDVTNYVGNSQEPYSWWAGNFRFVDLSGKLLGAHIAHAGL
CCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEECCCEEEEEECCCHHHHHHHHHHH
IVLWAGAMTLFELSRFDPSLPMYNQGLILLPHMATLGLGVGANGEIIDTYPYFAIGVVHL
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHCCCCCCCCCEEECCCHHHHHHHHH
VSSAILGAGGIYHAVLGPEKLDEKGFGYQWNDGNKMTTILGIHLVLLGIGALMLVVKAVY
HHHHHHCCCCCEEECCCHHHHCCCCCCEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
GSGLYDPAIANVRVITEPTLNPQTIFGYLVGITPDGWTLKGMAAVNSLEDVVGGHIWIGV
CCCCCCCCCCCEEEEECCCCCHHEEEEEEEEECCCCCEEEHHHHHHHHHHHHCCHHHHHH
ICILGGLWHINTAPTKWAKGLFVWSGEAYLAYSQAALAYMGFFAAYFVWVNDTVYPSVFY
HHHHCCCEECCCCCCHHHCEEEEECCCEEEEHHHHHHHHHHHHHHHHHEECCCCCCCEEE
GPVGVTNVDGTITPRTWLMLFQLIFACLLLAGHFWHGLRSRAIASGFVFSSLKFNPGALY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEE
GDAQFNNESLVTGIVQPYQNNPQLGNLATPINSSQLTLTWVRNLPIYRNGLSPIARGLEI
CCCCCCCCHHEEHHHCCCCCCCCCCCEECCCCCCEEEEEEEECCCCEECCHHHHHHHHHH
GMAHGYLLLGPFLKLGPLRNTDQALLAGGGSASGLVVILSICLFVYGMAVFQGSSKPVGV
HHCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
LPENLQTYGHWSMFTSGFLIGGIGGVIFACFILLEIGRAGIV
CCHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231; 3130247 [H]