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The map label for this gene is yjgF [C]

Identifier: 113476045

GI number: 113476045

Start: 3727114

End: 3727506

Strand: Direct

Name: yjgF [C]

Synonym: Tery_2416

Alternate gene names: 113476045

Gene position: 3727114-3727506 (Clockwise)

Preceding gene: 113476041

Following gene: 113476046

Centisome position: 48.09

GC content: 43.77

Gene sequence:

>393_bases
ATGATAACCCGTAAAATAATCAAAACCGACAAAGCACCAGAGCCAGTTGGCCCTTATAATCAAGCGATCGCTGCCACTGG
CCAAATGCTGTTTATCTCTGGTCAAATAGCGATCGACACCAAAACTAATCAAATAGTCTATAGGGAGGATGTAAGTAAGC
AAACAGAGCAAGTCATGGCCAATCTCGAAGCTATCCTTACTGAAGCCAACACTAATTGGTCAAACGTCGTCAAAACTACA
GTCTACCTGAAAAACATGGACGACTTCGCTACCGTCAATAATGTTTACGCCAAATACTTCGACCCTGAGAACGCACCCGC
TCGTGCTTGTGTAGAAGTAGCACGTCTACCCAAAGACGTACTTGTAGAAATTGACTGCATTGCTGTGATATAG

Upstream 100 bases:

>100_bases
TGCAAACTTTATTGATACTATAATGTATGAGGAAAAAAAATTTATTGACACTGAAACATTCATCAATAATTAACCCACAA
AATAGACAATAAAAGAAAAT

Downstream 100 bases:

>100_bases
GAATTTTAAGCTTAGGCAGGAAGGGTGAAAAAAACATCCTCCTGAGCAAAAAATCATCTCAACATCCGTATACCTTAGAA
GTCGCTACTAATGAGTTTTA

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MITRKIIKTDKAPEPVGPYNQAIAATGQMLFISGQIAIDTKTNQIVYREDVSKQTEQVMANLEAILTEANTNWSNVVKTT
VYLKNMDDFATVNNVYAKYFDPENAPARACVEVARLPKDVLVEIDCIAVI

Sequences:

>Translated_130_residues
MITRKIIKTDKAPEPVGPYNQAIAATGQMLFISGQIAIDTKTNQIVYREDVSKQTEQVMANLEAILTEANTNWSNVVKTT
VYLKNMDDFATVNNVYAKYFDPENAPARACVEVARLPKDVLVEIDCIAVI
>Mature_130_residues
MITRKIIKTDKAPEPVGPYNQAIAATGQMLFISGQIAIDTKTNQIVYREDVSKQTEQVMANLEAILTEANTNWSNVVKTT
VYLKNMDDFATVNNVYAKYFDPENAPARACVEVARLPKDVLVEIDCIAVI

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=128, Percent_Identity=42.1875, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=47.244094488189, Blast_Score=113, Evalue=4e-27,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=43.75, Blast_Score=110, Evalue=3e-26,
Organism=Escherichia coli, GI1787245, Length=127, Percent_Identity=26.7716535433071, Blast_Score=68, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71982075, Length=128, Percent_Identity=46.09375, Blast_Score=117, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI25148896, Length=128, Percent_Identity=46.09375, Blast_Score=117, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71982068, Length=128, Percent_Identity=46.09375, Blast_Score=116, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6322138, Length=123, Percent_Identity=41.4634146341463, Blast_Score=88, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=40, Blast_Score=75, Evalue=3e-15,
Organism=Drosophila melanogaster, GI19921376, Length=128, Percent_Identity=42.96875, Blast_Score=110, Evalue=3e-25,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14453; Mature: 14453

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITRKIIKTDKAPEPVGPYNQAIAATGQMLFISGQIAIDTKTNQIVYREDVSKQTEQVMA
CCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEECEEEEECCCCEEEEHHHHHHHHHHHHH
NLEAILTEANTNWSNVVKTTVYLKNMDDFATVNNVYAKYFDPENAPARACVEVARLPKDV
HHHHHHHCCCCCHHHHHEEEEEEECCCHHHHHHHHHHEEECCCCCHHHHHHHHHHCCHHH
LVEIDCIAVI
EEEEEEEEEC
>Mature Secondary Structure
MITRKIIKTDKAPEPVGPYNQAIAATGQMLFISGQIAIDTKTNQIVYREDVSKQTEQVMA
CCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEECEEEEECCCCEEEEHHHHHHHHHHHHH
NLEAILTEANTNWSNVVKTTVYLKNMDDFATVNNVYAKYFDPENAPARACVEVARLPKDV
HHHHHHHCCCCCHHHHHEEEEEEECCCHHHHHHHHHHEEECCCCCHHHHHHHHHHCCHHH
LVEIDCIAVI
EEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7787182; 8590279; 8905231 [H]