| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is surE [C]
Identifier: 113476016
GI number: 113476016
Start: 3685282
End: 3686040
Strand: Direct
Name: surE [C]
Synonym: Tery_2384
Alternate gene names: 113476016
Gene position: 3685282-3686040 (Clockwise)
Preceding gene: 113476014
Following gene: 113476021
Centisome position: 47.55
GC content: 38.34
Gene sequence:
>759_bases ATGTCCTTTTTTTTGTTAAGCATATTACCTGAGTTAAAGTTATTAAAAAATATGACATTTATTCTAACTAATGACGATGG AATTAATGCTCCGGGTATTAAAGCACTTTGGGAAGCTATCAATAATGCTGATTCGGCTATACCGTCTTTCGACAAAAGTA TTATTGTTGCTCCTCAGGGACAATTCTCTGGTTGTGGGCATCAAGTTACTACTAACCGACCAATTAATGTGCAACGTTTG TCTGAAGATAGGTATGCGATCGCAGGTACCCCAGCAGATTGTACTCGAATTGCAATAACACATGTTAATACAAATGTCAA ATGGGTGCTTTCTGGTATTAACTCAGGTGGTAACATGGGTTATGATACTTATGTATCTGGAACAGTAGCAGCAGTAAGAG AAGCAGCATTTTATAAAATCCCAGGAATTGCCCTTTCTCAATATCGTCAAGGGAAAAAGCCTGTGAACTGGGAAAGAGTA ACTGGTTTAGCCAGAAGCGTATTAATAAATTTACTCAAGCGCCCTATTGAGCAAGGAGCTTTTTGGAATGTAAACTTCCC CTATTTAGAACCGGAAGCACCAGACCCGGAAATAGTATTTTGCAAAACATCTATCCAACCATTGCCAATAGCTTATCAGA AGGACGGAGAAGATTTTTCTTATACAGGAAAATATGAAGAACGCGATCGCACTCCTGGCACAGATGTAGATGTTTGCCTT TCTGGTAAAATTGCCGTTACAAAAATTAAACTTTCATAG
Upstream 100 bases:
>100_bases TTATTTATAACTACTATCAGTTCAGGTTTTCAGATAACAAATATTACTTCATTAATATTGTTTTTTATGCCTATATAGAT GTATTGTATAGTACAGAAAT
Downstream 100 bases:
>100_bases ATATTGCTGTATAGCTTAAACTATTGAAACATTATACCAATTTCATAAACTTAAAACTTCACTTATAAAAGTGATCTATC AAGCTTGAAGTCGAAGATAT
Product: stationary phase survival protein SurE
Products: NA
Alternate protein names: Nucleoside 5'-monophosphate phosphohydrolase [H]
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MSFFLLSILPELKLLKNMTFILTNDDGINAPGIKALWEAINNADSAIPSFDKSIIVAPQGQFSGCGHQVTTNRPINVQRL SEDRYAIAGTPADCTRIAITHVNTNVKWVLSGINSGGNMGYDTYVSGTVAAVREAAFYKIPGIALSQYRQGKKPVNWERV TGLARSVLINLLKRPIEQGAFWNVNFPYLEPEAPDPEIVFCKTSIQPLPIAYQKDGEDFSYTGKYEERDRTPGTDVDVCL SGKIAVTKIKLS
Sequences:
>Translated_252_residues MSFFLLSILPELKLLKNMTFILTNDDGINAPGIKALWEAINNADSAIPSFDKSIIVAPQGQFSGCGHQVTTNRPINVQRL SEDRYAIAGTPADCTRIAITHVNTNVKWVLSGINSGGNMGYDTYVSGTVAAVREAAFYKIPGIALSQYRQGKKPVNWERV TGLARSVLINLLKRPIEQGAFWNVNFPYLEPEAPDPEIVFCKTSIQPLPIAYQKDGEDFSYTGKYEERDRTPGTDVDVCL SGKIAVTKIKLS >Mature_251_residues SFFLLSILPELKLLKNMTFILTNDDGINAPGIKALWEAINNADSAIPSFDKSIIVAPQGQFSGCGHQVTTNRPINVQRLS EDRYAIAGTPADCTRIAITHVNTNVKWVLSGINSGGNMGYDTYVSGTVAAVREAAFYKIPGIALSQYRQGKKPVNWERVT GLARSVLINLLKRPIEQGAFWNVNFPYLEPEAPDPEIVFCKTSIQPLPIAYQKDGEDFSYTGKYEERDRTPGTDVDVCLS GKIAVTKIKLS
Specific function: Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates [H]
COG id: COG0496
COG function: function code R; Predicted acid phosphatase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surE nucleotidase family [H]
Homologues:
Organism=Escherichia coli, GI1789101, Length=240, Percent_Identity=28.75, Blast_Score=84, Evalue=9e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002828 [H]
Pfam domain/function: PF01975 SurE [H]
EC number: =3.1.3.5 [H]
Molecular weight: Translated: 27730; Mature: 27599
Theoretical pI: Translated: 7.92; Mature: 7.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFFLLSILPELKLLKNMTFILTNDDGINAPGIKALWEAINNADSAIPSFDKSIIVAPQG CCEEHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCC QFSGCGHQVTTNRPINVQRLSEDRYAIAGTPADCTRIAITHVNTNVKWVLSGINSGGNMG CCCCCCCEEECCCCCEEEEECCCCEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCC YDTYVSGTVAAVREAAFYKIPGIALSQYRQGKKPVNWERVTGLARSVLINLLKRPIEQGA CHHHCCHHHHHHHHHHHEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC FWNVNFPYLEPEAPDPEIVFCKTSIQPLPIAYQKDGEDFSYTGKYEERDRTPGTDVDVCL EEECCCCEECCCCCCCCEEEEECCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCEEEEE SGKIAVTKIKLS CCCEEEEEEEEC >Mature Secondary Structure SFFLLSILPELKLLKNMTFILTNDDGINAPGIKALWEAINNADSAIPSFDKSIIVAPQG CEEHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCC QFSGCGHQVTTNRPINVQRLSEDRYAIAGTPADCTRIAITHVNTNVKWVLSGINSGGNMG CCCCCCCEEECCCCCEEEEECCCCEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCC YDTYVSGTVAAVREAAFYKIPGIALSQYRQGKKPVNWERVTGLARSVLINLLKRPIEQGA CHHHCCHHHHHHHHHHHEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC FWNVNFPYLEPEAPDPEIVFCKTSIQPLPIAYQKDGEDFSYTGKYEERDRTPGTDVDVCL EEECCCCEECCCCCCCCEEEEECCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCEEEEE SGKIAVTKIKLS CCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]