| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113476004
Identifier: 113476004
GI number: 113476004
Start: 3663405
End: 3664739
Strand: Direct
Name: 113476004
Synonym: Tery_2372
Alternate gene names: NA
Gene position: 3663405-3664739 (Clockwise)
Preceding gene: 113476003
Following gene: 113476005
Centisome position: 47.27
GC content: 41.72
Gene sequence:
>1335_bases ATGATAACTGAAATGACTGAAACAAATGATATTAACTCCCCGGCAGCTAATTCTGAACAGTCTACCCAAACTACTCAGGA TGTAAAAACAAAATCAAAAATAGACTCTTGGCAAAGTCATGTCAGTGGAATTTGGAATGATACCAACAAACGTTTCATGA AACTTCTCCCCATTGGTAAGGCAAGGCAAACAATAATGCAATGGTTTACTGTGGATGAAGCTGAAGTTGCAAAGATATTA GTTAAGGTACGCGCCGAACTTCCTACCACTGAGGCTATTTTAATTGGTAAACCCCAAACAGGTAAAAGTTCCATAGTACG CGGTTTGACAGGGGTTTCAAAAGAAATAATCGGTCAAGGTTTTCGCCCCCAGACTCAACACACACAACGTTATGCTTATC CTTCTGATGATTTGCCATTGTTGATTTTTACTGATACTGTGGGGTTAGGAGATGTGAAACAGGAAACTCCTATTATTATT CACGAGCTTTTGGCAGAGTTGCAGCAGGAAAGCAACCGCGCCAGAATCTTGATTTTGACTGTAAAAATTAATGATTTTGC TACGGATACTTTACGACAGGTAGCACAACAGTTGCGACAGGAATATCCAAATATTCCTTGTTTGTTAGCTGTGACTTGTC TGCACGAAGTTTACCCTCACTCCACTGAGGACCATCCCGAATATCCTCCAGAATATGAGGAGCTCCAGCGCGCTTTTGCT ACTATTAAAGAAGATTTTGCCGAGTTGTATAATAGTTCTGTATTGCTCGACTTTACTTTGGAAGAGGATGGGTATAACCC GGTGTTTTATGGTTTAGAAGCCTTTAGAGATAATTTAGCACAATTACTCCCAGAAGCAGAAGCACGAACAATTCATCAAT TATTAGATGAGCAAACAAGTAAACAACTGGGGAATATTTACCGAGATGTTGCGAGGCGTTACATTTTGTCATTTACTATT ATGGCAGCTACGGCAGCAGCAGTACCTTTGCCTTTTGCAACTATGCCAGTATTGACAGCGTTGCAAGTGTCGATGGTGGG TTTATTGGGAAATTTGTATGGGCAAACAATTTCTCCATCACAAGCTGGAGGGGTTGTTAGTGCTATTGGTGGCGGTTTTT TAGCTCAAGCAGTGGGGCGAGAGTTGATTAAATTTGTGCCTGGGTTGGGGAGCGCGATCGCTGCTTCTTGGGTAGCCGCT TATACTTGGGCTTTAGGTGAAAGTGCTTGTGTTTATTTTGGAGATTTGATGGGAGGAAAAAAGCCAGATCCACAAAAAAT TCAGGGAGTAATGCAGGAGGCTTTTGAGTCGGCACAGGAAAGATTTAAAGGCTAG
Upstream 100 bases:
>100_bases ATATCGGGATAATTAAGTTGTAAAAAAAGTTTTTCTTTGTAGTAAAGCTTAAGCAATATCTATCTTGGCACTAAAGCTCT GCTACAAGCTTTAACAATAA
Downstream 100 bases:
>100_bases CATGGGCATTTTTTTTGTTCCTTTTTTTTAGTTATTAGTTATCAGTACTGACCGCTGAAGTAAGCTGTCACAACTTGGTT ATTGTTTGGAGGGTTTGTAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 444; Mature: 444
Protein sequence:
>444_residues MITEMTETNDINSPAANSEQSTQTTQDVKTKSKIDSWQSHVSGIWNDTNKRFMKLLPIGKARQTIMQWFTVDEAEVAKIL VKVRAELPTTEAILIGKPQTGKSSIVRGLTGVSKEIIGQGFRPQTQHTQRYAYPSDDLPLLIFTDTVGLGDVKQETPIII HELLAELQQESNRARILILTVKINDFATDTLRQVAQQLRQEYPNIPCLLAVTCLHEVYPHSTEDHPEYPPEYEELQRAFA TIKEDFAELYNSSVLLDFTLEEDGYNPVFYGLEAFRDNLAQLLPEAEARTIHQLLDEQTSKQLGNIYRDVARRYILSFTI MAATAAAVPLPFATMPVLTALQVSMVGLLGNLYGQTISPSQAGGVVSAIGGGFLAQAVGRELIKFVPGLGSAIAASWVAA YTWALGESACVYFGDLMGGKKPDPQKIQGVMQEAFESAQERFKG
Sequences:
>Translated_444_residues MITEMTETNDINSPAANSEQSTQTTQDVKTKSKIDSWQSHVSGIWNDTNKRFMKLLPIGKARQTIMQWFTVDEAEVAKIL VKVRAELPTTEAILIGKPQTGKSSIVRGLTGVSKEIIGQGFRPQTQHTQRYAYPSDDLPLLIFTDTVGLGDVKQETPIII HELLAELQQESNRARILILTVKINDFATDTLRQVAQQLRQEYPNIPCLLAVTCLHEVYPHSTEDHPEYPPEYEELQRAFA TIKEDFAELYNSSVLLDFTLEEDGYNPVFYGLEAFRDNLAQLLPEAEARTIHQLLDEQTSKQLGNIYRDVARRYILSFTI MAATAAAVPLPFATMPVLTALQVSMVGLLGNLYGQTISPSQAGGVVSAIGGGFLAQAVGRELIKFVPGLGSAIAASWVAA YTWALGESACVYFGDLMGGKKPDPQKIQGVMQEAFESAQERFKG >Mature_444_residues MITEMTETNDINSPAANSEQSTQTTQDVKTKSKIDSWQSHVSGIWNDTNKRFMKLLPIGKARQTIMQWFTVDEAEVAKIL VKVRAELPTTEAILIGKPQTGKSSIVRGLTGVSKEIIGQGFRPQTQHTQRYAYPSDDLPLLIFTDTVGLGDVKQETPIII HELLAELQQESNRARILILTVKINDFATDTLRQVAQQLRQEYPNIPCLLAVTCLHEVYPHSTEDHPEYPPEYEELQRAFA TIKEDFAELYNSSVLLDFTLEEDGYNPVFYGLEAFRDNLAQLLPEAEARTIHQLLDEQTSKQLGNIYRDVARRYILSFTI MAATAAAVPLPFATMPVLTALQVSMVGLLGNLYGQTISPSQAGGVVSAIGGGFLAQAVGRELIKFVPGLGSAIAASWVAA YTWALGESACVYFGDLMGGKKPDPQKIQGVMQEAFESAQERFKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49073; Mature: 49073
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITEMTETNDINSPAANSEQSTQTTQDVKTKSKIDSWQSHVSGIWNDTNKRFMKLLPIGK CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCH ARQTIMQWFTVDEAEVAKILVKVRAELPTTEAILIGKPQTGKSSIVRGLTGVSKEIIGQG HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCC FRPQTQHTQRYAYPSDDLPLLIFTDTVGLGDVKQETPIIIHELLAELQQESNRARILILT CCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE VKINDFATDTLRQVAQQLRQEYPNIPCLLAVTCLHEVYPHSTEDHPEYPPEYEELQRAFA EEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH TIKEDFAELYNSSVLLDFTLEEDGYNPVFYGLEAFRDNLAQLLPEAEARTIHQLLDEQTS HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH KQLGNIYRDVARRYILSFTIMAATAAAVPLPFATMPVLTALQVSMVGLLGNLYGQTISPS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH QAGGVVSAIGGGFLAQAVGRELIKFVPGLGSAIAASWVAAYTWALGESACVYFGDLMGGK HHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC KPDPQKIQGVMQEAFESAQERFKG CCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MITEMTETNDINSPAANSEQSTQTTQDVKTKSKIDSWQSHVSGIWNDTNKRFMKLLPIGK CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCH ARQTIMQWFTVDEAEVAKILVKVRAELPTTEAILIGKPQTGKSSIVRGLTGVSKEIIGQG HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCC FRPQTQHTQRYAYPSDDLPLLIFTDTVGLGDVKQETPIIIHELLAELQQESNRARILILT CCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE VKINDFATDTLRQVAQQLRQEYPNIPCLLAVTCLHEVYPHSTEDHPEYPPEYEELQRAFA EEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH TIKEDFAELYNSSVLLDFTLEEDGYNPVFYGLEAFRDNLAQLLPEAEARTIHQLLDEQTS HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH KQLGNIYRDVARRYILSFTIMAATAAAVPLPFATMPVLTALQVSMVGLLGNLYGQTISPS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH QAGGVVSAIGGGFLAQAVGRELIKFVPGLGSAIAASWVAAYTWALGESACVYFGDLMGGK HHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC KPDPQKIQGVMQEAFESAQERFKG CCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA