| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476005
Identifier: 113476005
GI number: 113476005
Start: 3665247
End: 3666287
Strand: Direct
Name: 113476005
Synonym: Tery_2373
Alternate gene names: NA
Gene position: 3665247-3666287 (Clockwise)
Preceding gene: 113476004
Following gene: 113476006
Centisome position: 47.29
GC content: 39.1
Gene sequence:
>1041_bases ATGATATCTGAAGTTCCCCAATTCCCCGAAGCTCTTGCCGAAGCTTTAAATAATTTTCCCGAACTCAATTTAGACCTACC AGACCCAGAAGATGAAGAAATTCCTGACTCTGAGTTTGAAAATGTAGTAGATATAGCCTGGAAAGTTTGCGATCGCTTTG ATCTCCAGACCGAAATTTGGCGAGGCCGTATCCTGAGAATTATTAGAGACCGAGAAAAAAAAGGGGGCGATGGCCGGGGT AGCGGATTTCTAAATTGGCTTAAAGAAAGAGAAATTGGTAAAAGCCAAGCTTATGCCTTAATAGAATTGGCCAATAGTGC CGATACTTTAATGGATAAAGGACATTTAGACCCCGACTCAATTAATAATTTTAGCAAAAGGGCTTTTGTGGAAACAGCTA AATCTTCCACAGAAGTCCAACAAATGGTTACAGATGCAGCGAAAAAAGGGGATCGAATTACTAGACGAGAAGTTAAGCAA CTAGCAGACGAATGGACGGCCGTTAGTTCGGATTTGCTTCCAGAGGAAATTAGATCCAAGGCTACTTCTGGTTCTATGCC ACCACGTTATTTAGCTCCCCTAGTCCGGGAAATGGAAAAATTACCAGATTCCCATTTAAATGCAATTCAAGAGGAAATAG TACAAAGTCCAGAATTAGATACTATCAAGCAACTAACCTCAGATGCTCGTAACTTATCAAAATATCTTGATGCTGCGGCC AAGGTTCAAGCATTGAACGAATCATCATTAGATATGGAAATGGTATTAGAAGAAGCTTTAAGATTAGAGTGTCTCAATAT AGTTGCTGACCTGGTCAAACAATCTGCCCAATTAGAAACAACAATGGCCAAACTTTATAGTAGCTGGAGGCGTTTAGGTA ATTTATCAGAACGATTATTTGTGGATACTGGTGCTAGTACACCTCATTTACGACATTTATTAGGGTGTCTTGATAAGCTT TCAAGTAATGTAATTGAACTGAGCTTAAATGACCTTAATAATCAAACTGTTCGTTTACAAATACTATCGGAGACTGATTA A
Upstream 100 bases:
>100_bases TAAATCTTTTTCTGAGCTCCCTACTCTAATTGAGATTGATATTATTTAGTTAATAATGCAATAATATTTCGGCACTATTG AGCAATAATAATATTCTGTT
Downstream 100 bases:
>100_bases TTAGTATTCAGCTTTTTCTTTCCTAGGACTTAGGTGGAAACTGAGCATGAAAACAATGCTAGGTTTATCCTATAAATAGG AGTTAAACTAATGCTAGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 346; Mature: 346
Protein sequence:
>346_residues MISEVPQFPEALAEALNNFPELNLDLPDPEDEEIPDSEFENVVDIAWKVCDRFDLQTEIWRGRILRIIRDREKKGGDGRG SGFLNWLKEREIGKSQAYALIELANSADTLMDKGHLDPDSINNFSKRAFVETAKSSTEVQQMVTDAAKKGDRITRREVKQ LADEWTAVSSDLLPEEIRSKATSGSMPPRYLAPLVREMEKLPDSHLNAIQEEIVQSPELDTIKQLTSDARNLSKYLDAAA KVQALNESSLDMEMVLEEALRLECLNIVADLVKQSAQLETTMAKLYSSWRRLGNLSERLFVDTGASTPHLRHLLGCLDKL SSNVIELSLNDLNNQTVRLQILSETD
Sequences:
>Translated_346_residues MISEVPQFPEALAEALNNFPELNLDLPDPEDEEIPDSEFENVVDIAWKVCDRFDLQTEIWRGRILRIIRDREKKGGDGRG SGFLNWLKEREIGKSQAYALIELANSADTLMDKGHLDPDSINNFSKRAFVETAKSSTEVQQMVTDAAKKGDRITRREVKQ LADEWTAVSSDLLPEEIRSKATSGSMPPRYLAPLVREMEKLPDSHLNAIQEEIVQSPELDTIKQLTSDARNLSKYLDAAA KVQALNESSLDMEMVLEEALRLECLNIVADLVKQSAQLETTMAKLYSSWRRLGNLSERLFVDTGASTPHLRHLLGCLDKL SSNVIELSLNDLNNQTVRLQILSETD >Mature_346_residues MISEVPQFPEALAEALNNFPELNLDLPDPEDEEIPDSEFENVVDIAWKVCDRFDLQTEIWRGRILRIIRDREKKGGDGRG SGFLNWLKEREIGKSQAYALIELANSADTLMDKGHLDPDSINNFSKRAFVETAKSSTEVQQMVTDAAKKGDRITRREVKQ LADEWTAVSSDLLPEEIRSKATSGSMPPRYLAPLVREMEKLPDSHLNAIQEEIVQSPELDTIKQLTSDARNLSKYLDAAA KVQALNESSLDMEMVLEEALRLECLNIVADLVKQSAQLETTMAKLYSSWRRLGNLSERLFVDTGASTPHLRHLLGCLDKL SSNVIELSLNDLNNQTVRLQILSETD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38979; Mature: 38979
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISEVPQFPEALAEALNNFPELNLDLPDPEDEEIPDSEFENVVDIAWKVCDRFDLQTEIW CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHH RGRILRIIRDREKKGGDGRGSGFLNWLKEREIGKSQAYALIELANSADTLMDKGHLDPDS HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHH INNFSKRAFVETAKSSTEVQQMVTDAAKKGDRITRREVKQLADEWTAVSSDLLPEEIRSK HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH ATSGSMPPRYLAPLVREMEKLPDSHLNAIQEEIVQSPELDTIKQLTSDARNLSKYLDAAA HCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH KVQALNESSLDMEMVLEEALRLECLNIVADLVKQSAQLETTMAKLYSSWRRLGNLSERLF HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHE VDTGASTPHLRHLLGCLDKLSSNVIELSLNDLNNQTVRLQILSETD EECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCC >Mature Secondary Structure MISEVPQFPEALAEALNNFPELNLDLPDPEDEEIPDSEFENVVDIAWKVCDRFDLQTEIW CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHH RGRILRIIRDREKKGGDGRGSGFLNWLKEREIGKSQAYALIELANSADTLMDKGHLDPDS HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHH INNFSKRAFVETAKSSTEVQQMVTDAAKKGDRITRREVKQLADEWTAVSSDLLPEEIRSK HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH ATSGSMPPRYLAPLVREMEKLPDSHLNAIQEEIVQSPELDTIKQLTSDARNLSKYLDAAA HCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH KVQALNESSLDMEMVLEEALRLECLNIVADLVKQSAQLETTMAKLYSSWRRLGNLSERLF HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHE VDTGASTPHLRHLLGCLDKLSSNVIELSLNDLNNQTVRLQILSETD EECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA