Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475926

Identifier: 113475926

GI number: 113475926

Start: 3560276

End: 3560788

Strand: Direct

Name: 113475926

Synonym: Tery_2289

Alternate gene names: NA

Gene position: 3560276-3560788 (Clockwise)

Preceding gene: 113475925

Following gene: 113475927

Centisome position: 45.94

GC content: 32.16

Gene sequence:

>513_bases
ATGACAATTATTTCTCCAAATCTAAAATATAATCAACAACGTTGGCAAACAATAGTTTGTTTAACTCTAGGTTTCTGGTT
AAGCGCCTGCATAGTTTTAGACCTAGTAATTATGCCAAGTATGTATGCTTCTGGGATGATGAATACACCAGATTTTACAG
TAGCAGGTTCAGTAATATTTTCTGTATTTAACCGAGTTGAATTACTTTGTGCCAGCTTAGGTTTAACAGGTTTATTAGTG
TTAAGTACTAAGGCTAGTAATTTTATTAAAAAGAGTAAAACAGCAATTATTTTTTCTATAATATTATTAGGAATAGTTCT
AATTGATACCTACGGTTTAACTCCTCAAATGACTGCTTTGGGTATTAATCTAAGTTTATTTGAGTCAGTTAAAGAAGTTC
CTGTGGCAATGAACCAAATGCACGGCGGATACTGGTTATTAGAAATAATTAAATTGGTTATTGGTGCTACTTTATTCGGT
TGGTGTTACCGACAACCAACAAAGATAGATTAA

Upstream 100 bases:

>100_bases
AAAAGCAAATTGTAAAAATACTTAATACTACTTAATACTAATTGAGTAGAATTTTCGTTAAGCTGTAAATCAGTCGCTAG
ATACATTAAGGTAAAAGTCG

Downstream 100 bases:

>100_bases
TAATTATTTTTACCGTGCTAGAAAATAGTCAAAAAAATTAGGGTGAGTAAATTTTATTTGAGATCTAATTATCTCAATTA
GTAAATATTTACTCACCCTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MTIISPNLKYNQQRWQTIVCLTLGFWLSACIVLDLVIMPSMYASGMMNTPDFTVAGSVIFSVFNRVELLCASLGLTGLLV
LSTKASNFIKKSKTAIIFSIILLGIVLIDTYGLTPQMTALGINLSLFESVKEVPVAMNQMHGGYWLLEIIKLVIGATLFG
WCYRQPTKID

Sequences:

>Translated_170_residues
MTIISPNLKYNQQRWQTIVCLTLGFWLSACIVLDLVIMPSMYASGMMNTPDFTVAGSVIFSVFNRVELLCASLGLTGLLV
LSTKASNFIKKSKTAIIFSIILLGIVLIDTYGLTPQMTALGINLSLFESVKEVPVAMNQMHGGYWLLEIIKLVIGATLFG
WCYRQPTKID
>Mature_169_residues
TIISPNLKYNQQRWQTIVCLTLGFWLSACIVLDLVIMPSMYASGMMNTPDFTVAGSVIFSVFNRVELLCASLGLTGLLVL
STKASNFIKKSKTAIIFSIILLGIVLIDTYGLTPQMTALGINLSLFESVKEVPVAMNQMHGGYWLLEIIKLVIGATLFGW
CYRQPTKID

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18789; Mature: 18658

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIISPNLKYNQQRWQTIVCLTLGFWLSACIVLDLVIMPSMYASGMMNTPDFTVAGSVIF
CCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
SVFNRVELLCASLGLTGLLVLSTKASNFIKKSKTAIIFSIILLGIVLIDTYGLTPQMTAL
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
GINLSLFESVKEVPVAMNQMHGGYWLLEIIKLVIGATLFGWCYRQPTKID
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TIISPNLKYNQQRWQTIVCLTLGFWLSACIVLDLVIMPSMYASGMMNTPDFTVAGSVIF
CEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
SVFNRVELLCASLGLTGLLVLSTKASNFIKKSKTAIIFSIILLGIVLIDTYGLTPQMTAL
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
GINLSLFESVKEVPVAMNQMHGGYWLLEIIKLVIGATLFGWCYRQPTKID
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA