Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475921

Identifier: 113475921

GI number: 113475921

Start: 3554368

End: 3554751

Strand: Direct

Name: 113475921

Synonym: Tery_2284

Alternate gene names: NA

Gene position: 3554368-3554751 (Clockwise)

Preceding gene: 113475916

Following gene: 113475923

Centisome position: 45.86

GC content: 37.5

Gene sequence:

>384_bases
ATGTTAGGTACTTTTCAAAAAAGCCATCTCAGGATTGAGATAGAAGCTGCCGAAGCTACCATAAGAGATAGTTTGTTACG
TCCATCTCAGTTACAAACATGGTTATGGCCTCAGAATTTTTCTCCTGGACTACCAGAACAATTATCTGAAGGTGTAAAGT
TTCAAACTTCGGTTGGCCTAATAGAAATTAAGCATTATGTTGATGTAGTAGGGCCTAATTGTTTGAGATTACTCCTTAGT
CAAAGCATTGATGGATTTCATGAGTGGTACTGGGGAGATGGTTGGATACAGTCTCGTCTAGAAGGAATATCTATGTTTCC
TATAAATTTGGGTCAAACTTTTAGTTTGCTTCGTTTGCGAGAGTTTTTGTCTGGAAAAGAATAA

Upstream 100 bases:

>100_bases
AAGTTTCGTATCCCGGGCATGTTGTCTACTATAGCTGTACCCCACCCTTAGAGTTATCTGCTGTAAATTGATATCTACTG
TTACTAGTTACTAGATTATT

Downstream 100 bases:

>100_bases
GTGGTTAGGTTTTAGGTTATCACAAATGAAAAATAACTAAATTTCCCAAGTCCTTTGGAAATTATCAGCAGTTTTTTACT
CATTATATCTCTCCACAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MLGTFQKSHLRIEIEAAEATIRDSLLRPSQLQTWLWPQNFSPGLPEQLSEGVKFQTSVGLIEIKHYVDVVGPNCLRLLLS
QSIDGFHEWYWGDGWIQSRLEGISMFPINLGQTFSLLRLREFLSGKE

Sequences:

>Translated_127_residues
MLGTFQKSHLRIEIEAAEATIRDSLLRPSQLQTWLWPQNFSPGLPEQLSEGVKFQTSVGLIEIKHYVDVVGPNCLRLLLS
QSIDGFHEWYWGDGWIQSRLEGISMFPINLGQTFSLLRLREFLSGKE
>Mature_127_residues
MLGTFQKSHLRIEIEAAEATIRDSLLRPSQLQTWLWPQNFSPGLPEQLSEGVKFQTSVGLIEIKHYVDVVGPNCLRLLLS
QSIDGFHEWYWGDGWIQSRLEGISMFPINLGQTFSLLRLREFLSGKE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14574; Mature: 14574

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGTFQKSHLRIEIEAAEATIRDSLLRPSQLQTWLWPQNFSPGLPEQLSEGVKFQTSVGL
CCCCCCCCEEEEEEEHHHHHHHHHHCCCCHHHEEECCCCCCCCCCHHHHCCCEEECCCCC
IEIKHYVDVVGPNCLRLLLSQSIDGFHEWYWGDGWIQSRLEGISMFPINLGQTFSLLRLR
EEHHHHHHHCCHHHHHHHHHHCCCHHHHHHCCCHHHHHHHCCCEEEEECCCCHHHHHHHH
EFLSGKE
HHHCCCC
>Mature Secondary Structure
MLGTFQKSHLRIEIEAAEATIRDSLLRPSQLQTWLWPQNFSPGLPEQLSEGVKFQTSVGL
CCCCCCCCEEEEEEEHHHHHHHHHHCCCCHHHEEECCCCCCCCCCHHHHCCCEEECCCCC
IEIKHYVDVVGPNCLRLLLSQSIDGFHEWYWGDGWIQSRLEGISMFPINLGQTFSLLRLR
EEHHHHHHHCCHHHHHHHHHHCCCHHHHHHCCCHHHHHHHCCCEEEEECCCCHHHHHHHH
EFLSGKE
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA