| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113475923
Identifier: 113475923
GI number: 113475923
Start: 3556071
End: 3556703
Strand: Direct
Name: 113475923
Synonym: Tery_2286
Alternate gene names: NA
Gene position: 3556071-3556703 (Clockwise)
Preceding gene: 113475921
Following gene: 113475924
Centisome position: 45.88
GC content: 29.38
Gene sequence:
>633_bases ATGAGCGATTTTAAAGTAAGGCCACAAAGTGATTTAACTACCATTCAAATGTTAGAAAGATACAACTTACAGGATGAAAA AAACCTAAAAAGTTGGGCTCAATTACATAATATTGATAGTAGTCTGGGTTACTATAGCCCAGATGAAGTTGATTTAATAG ATCATGTACACCATCATATTTACAATCTTGGCATGAGCATTATTGAATATCAAACTTTTATAGAACATCGTCAAATTAAG TCACAAAAATCTGTCCAAGAATACAAAAATAATCTGATAGATAATGGTCAATATAATAATTATACCAATGATGGAGTAAA TGATACTTTAGAACAAGTTAATAATGAAGGTTATGCAGCAATAGAAATGTTGAAAGATCAGTATTCGGAAGCAATTGATG TAATGGGAGAAAGAATTGCTGATCATTTTATAGATGAATTAGATTTATCTGTAATGCGACATCTAGTTAAAAAAGTAAAA GCACGTCAAAAACTTAATGGTAAAGTTTCATCAAATCGTTTTATGAAAACAATTAAAGCTGTTTTACAACCTCAAAATGG TAATTTTCTTATTCCTGAAGATGATGAGGATGAGTCTAGTATAGAAGTAGAACAAAATCATCGACTTGATTAA
Upstream 100 bases:
>100_bases CTCATCCATAATTGATAACTTAAAGTATCTTTAAAGTTAATATATATCATATAATATATCATATAAATATATCTGAAATA ATTTTAGGGAGAATTGATTA
Downstream 100 bases:
>100_bases TTAATTTGTATATCGCTAATGTTTGTTAATCACAGAAAATAAATTTTTGACAATTGTTTTTGTTGGGTAATATCAGTACT TGGGCAAAAAAAAATTAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 210; Mature: 209
Protein sequence:
>210_residues MSDFKVRPQSDLTTIQMLERYNLQDEKNLKSWAQLHNIDSSLGYYSPDEVDLIDHVHHHIYNLGMSIIEYQTFIEHRQIK SQKSVQEYKNNLIDNGQYNNYTNDGVNDTLEQVNNEGYAAIEMLKDQYSEAIDVMGERIADHFIDELDLSVMRHLVKKVK ARQKLNGKVSSNRFMKTIKAVLQPQNGNFLIPEDDEDESSIEVEQNHRLD
Sequences:
>Translated_210_residues MSDFKVRPQSDLTTIQMLERYNLQDEKNLKSWAQLHNIDSSLGYYSPDEVDLIDHVHHHIYNLGMSIIEYQTFIEHRQIK SQKSVQEYKNNLIDNGQYNNYTNDGVNDTLEQVNNEGYAAIEMLKDQYSEAIDVMGERIADHFIDELDLSVMRHLVKKVK ARQKLNGKVSSNRFMKTIKAVLQPQNGNFLIPEDDEDESSIEVEQNHRLD >Mature_209_residues SDFKVRPQSDLTTIQMLERYNLQDEKNLKSWAQLHNIDSSLGYYSPDEVDLIDHVHHHIYNLGMSIIEYQTFIEHRQIKS QKSVQEYKNNLIDNGQYNNYTNDGVNDTLEQVNNEGYAAIEMLKDQYSEAIDVMGERIADHFIDELDLSVMRHLVKKVKA RQKLNGKVSSNRFMKTIKAVLQPQNGNFLIPEDDEDESSIEVEQNHRLD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24518; Mature: 24386
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDFKVRPQSDLTTIQMLERYNLQDEKNLKSWAQLHNIDSSLGYYSPDEVDLIDHVHHHI CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH YNLGMSIIEYQTFIEHRQIKSQKSVQEYKNNLIDNGQYNNYTNDGVNDTLEQVNNEGYAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHH IEMLKDQYSEAIDVMGERIADHFIDELDLSVMRHLVKKVKARQKLNGKVSSNRFMKTIKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH VLQPQNGNFLIPEDDEDESSIEVEQNHRLD HHCCCCCCEECCCCCCCCCCEEEHHCCCCC >Mature Secondary Structure SDFKVRPQSDLTTIQMLERYNLQDEKNLKSWAQLHNIDSSLGYYSPDEVDLIDHVHHHI CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH YNLGMSIIEYQTFIEHRQIKSQKSVQEYKNNLIDNGQYNNYTNDGVNDTLEQVNNEGYAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHH IEMLKDQYSEAIDVMGERIADHFIDELDLSVMRHLVKKVKARQKLNGKVSSNRFMKTIKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH VLQPQNGNFLIPEDDEDESSIEVEQNHRLD HHCCCCCCEECCCCCCCCCCEEEHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA