| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475897
Identifier: 113475897
GI number: 113475897
Start: 3513238
End: 3514542
Strand: Direct
Name: 113475897
Synonym: Tery_2257
Alternate gene names: NA
Gene position: 3513238-3514542 (Clockwise)
Preceding gene: 113475896
Following gene: 113475898
Centisome position: 45.33
GC content: 34.41
Gene sequence:
>1305_bases ATGCACCAAATATTAAAAATAAAACAAATCCTCACTGGCACTTTAACAACAATGGCCAGCATTACCATCATTTCAATTGG AAATATACAGAGTGCCTCAGCAGCAGAATCTCATACTAAATCTGTTCAAGAACTTTATGAGATGCGCGATCGCATCGTAA ATCAATTAGAATCTCTACCTACTCCTAGAAAAACATTATTTTTTTCTGAGCAATATCAAACAACATTAGAAAAACAACAA AACTTAGTTCAAAAATTACAAGAAATTGATGTTCAAATATTAATTGAACAGCGAGCTAATGATAATTGGAAACAAGCATT AAATCTAGGTGCTCAAGCTGCAAAAGTATCAGTATCTCAAAATCCCAGCCTCAAAACTAGAAAAACACAAAAACATCTCT GGCAACAAGCTATTTATAACTTAGAGGAAATTCCTACCGACTCACTTATCGGAGAAAAAACTAATAAAAAACTCAAAGAA TATAAGCGCAGTCTCAATGATTATTCTGATCAATTAAACCTAACTAAATCCAAATTTTTAGAGAGAATTCGTAAAGACAG TGGCCTATCAAGCAAAGCGATGATTACTGTTTGTAATCTCCAACGAGAATGCTTAGATTTAAATGGTAATAAACCACCAG CAAGTGCTGCAAGTTTAATAAAAGTTCCTATTGCTGTAGCATTGATGCAAAAAGTATCCAAAGAAAATATTAGTTTAGAT ACTCCTGTTTATGTGAGTCGAGGTAATTTTACTGAGGATGGTTCAAAAATTCGAGCTAGAAAACGTTATCCCTTGAAAAC TTTGGTCGGAGAAATGATTGACCATAGTAGTAATATTGCCACAAATCAACTAATTGATTATTTAGGGCAACCTTATATTA ATAAAGTTCTCAAAGATGATGGCTACAAAATTATTCGGGTCAACTACAAACTAATGGGCAACCGTATTAGGCCTAAAAAT CCCGGTAGAGGTCGTAATCGTTTAACCAGCAATGAGCTAACAGATATGATGGTCTCAATATATAATAACGAGTACCCAAA TTCTGATGTATTGATAGAAGCATTAGCTAATCAGAAAGATAGGTTATTGGGATATGCTGGCCTAGAAAAATTGCCAGAAG CCAAATGGTTAGGTGAAAAGACTGGAGAAAATTCTCGTGCTCTGGGTACTACTTTAGGATTTAGTATTAATGGCCAAGTT TACGTAATGACTGTAATTGATAATCGTGGTGGACGGGATCCTCAGATTCGTGCTTCTGTTAATAAGTTGGCCAAATATCT AATTGATAATGATGGTCTGCTATAG
Upstream 100 bases:
>100_bases TAGTATATTTGTATTCAGACTGATAGATTAATTTTCTTTAGAGTTAAAGATTATCTTTATTAGTCAGCAGAAAATTATTT ATTTGTTTGGGAAAAATTAT
Downstream 100 bases:
>100_bases ATAGATGGCGAGATCGATATTTAACCACAGGCTCAATAGTCCCTAAGGCCAATGTACCTCCTCCTCAAATATCTAAAATT AAAGATTGGGAAGAATTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 434; Mature: 434
Protein sequence:
>434_residues MHQILKIKQILTGTLTTMASITIISIGNIQSASAAESHTKSVQELYEMRDRIVNQLESLPTPRKTLFFSEQYQTTLEKQQ NLVQKLQEIDVQILIEQRANDNWKQALNLGAQAAKVSVSQNPSLKTRKTQKHLWQQAIYNLEEIPTDSLIGEKTNKKLKE YKRSLNDYSDQLNLTKSKFLERIRKDSGLSSKAMITVCNLQRECLDLNGNKPPASAASLIKVPIAVALMQKVSKENISLD TPVYVSRGNFTEDGSKIRARKRYPLKTLVGEMIDHSSNIATNQLIDYLGQPYINKVLKDDGYKIIRVNYKLMGNRIRPKN PGRGRNRLTSNELTDMMVSIYNNEYPNSDVLIEALANQKDRLLGYAGLEKLPEAKWLGEKTGENSRALGTTLGFSINGQV YVMTVIDNRGGRDPQIRASVNKLAKYLIDNDGLL
Sequences:
>Translated_434_residues MHQILKIKQILTGTLTTMASITIISIGNIQSASAAESHTKSVQELYEMRDRIVNQLESLPTPRKTLFFSEQYQTTLEKQQ NLVQKLQEIDVQILIEQRANDNWKQALNLGAQAAKVSVSQNPSLKTRKTQKHLWQQAIYNLEEIPTDSLIGEKTNKKLKE YKRSLNDYSDQLNLTKSKFLERIRKDSGLSSKAMITVCNLQRECLDLNGNKPPASAASLIKVPIAVALMQKVSKENISLD TPVYVSRGNFTEDGSKIRARKRYPLKTLVGEMIDHSSNIATNQLIDYLGQPYINKVLKDDGYKIIRVNYKLMGNRIRPKN PGRGRNRLTSNELTDMMVSIYNNEYPNSDVLIEALANQKDRLLGYAGLEKLPEAKWLGEKTGENSRALGTTLGFSINGQV YVMTVIDNRGGRDPQIRASVNKLAKYLIDNDGLL >Mature_434_residues MHQILKIKQILTGTLTTMASITIISIGNIQSASAAESHTKSVQELYEMRDRIVNQLESLPTPRKTLFFSEQYQTTLEKQQ NLVQKLQEIDVQILIEQRANDNWKQALNLGAQAAKVSVSQNPSLKTRKTQKHLWQQAIYNLEEIPTDSLIGEKTNKKLKE YKRSLNDYSDQLNLTKSKFLERIRKDSGLSSKAMITVCNLQRECLDLNGNKPPASAASLIKVPIAVALMQKVSKENISLD TPVYVSRGNFTEDGSKIRARKRYPLKTLVGEMIDHSSNIATNQLIDYLGQPYINKVLKDDGYKIIRVNYKLMGNRIRPKN PGRGRNRLTSNELTDMMVSIYNNEYPNSDVLIEALANQKDRLLGYAGLEKLPEAKWLGEKTGENSRALGTTLGFSINGQV YVMTVIDNRGGRDPQIRASVNKLAKYLIDNDGLL
Specific function: Unknown
COG id: COG2367
COG function: function code V; Beta-lactamase class A
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48956; Mature: 48956
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHQILKIKQILTGTLTTMASITIISIGNIQSASAAESHTKSVQELYEMRDRIVNQLESLP CCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC TPRKTLFFSEQYQTTLEKQQNLVQKLQEIDVQILIEQRANDNWKQALNLGAQAAKVSVSQ CCHHHEEECHHHHHHHHHHHHHHHHHHHCCHHEEEEHHCCCCHHHHHHCCCHHHEEECCC NPSLKTRKTQKHLWQQAIYNLEEIPTDSLIGEKTNKKLKEYKRSLNDYSDQLNLTKSKFL CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH ERIRKDSGLSSKAMITVCNLQRECLDLNGNKPPASAASLIKVPIAVALMQKVSKENISLD HHHHHHCCCCCCCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC TPVYVSRGNFTEDGSKIRARKRYPLKTLVGEMIDHSSNIATNQLIDYLGQPYINKVLKDD CCEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCC GYKIIRVNYKLMGNRIRPKNPGRGRNRLTSNELTDMMVSIYNNEYPNSDVLIEALANQKD CCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHH RLLGYAGLEKLPEAKWLGEKTGENSRALGTTLGFSINGQVYVMTVIDNRGGRDPQIRASV HHHHHHHHHHCCCHHHCCCCCCCCCCHHHHEECEEECCCEEEEEEEECCCCCCCHHHHHH NKLAKYLIDNDGLL HHHHHHHHCCCCCC >Mature Secondary Structure MHQILKIKQILTGTLTTMASITIISIGNIQSASAAESHTKSVQELYEMRDRIVNQLESLP CCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC TPRKTLFFSEQYQTTLEKQQNLVQKLQEIDVQILIEQRANDNWKQALNLGAQAAKVSVSQ CCHHHEEECHHHHHHHHHHHHHHHHHHHCCHHEEEEHHCCCCHHHHHHCCCHHHEEECCC NPSLKTRKTQKHLWQQAIYNLEEIPTDSLIGEKTNKKLKEYKRSLNDYSDQLNLTKSKFL CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH ERIRKDSGLSSKAMITVCNLQRECLDLNGNKPPASAASLIKVPIAVALMQKVSKENISLD HHHHHHCCCCCCCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC TPVYVSRGNFTEDGSKIRARKRYPLKTLVGEMIDHSSNIATNQLIDYLGQPYINKVLKDD CCEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCC GYKIIRVNYKLMGNRIRPKNPGRGRNRLTSNELTDMMVSIYNNEYPNSDVLIEALANQKD CCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHH RLLGYAGLEKLPEAKWLGEKTGENSRALGTTLGFSINGQVYVMTVIDNRGGRDPQIRASV HHHHHHHHHHCCCHHHCCCCCCCCCCHHHHEECEEECCCEEEEEEEECCCCCCCHHHHHH NKLAKYLIDNDGLL HHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA