| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475898
Identifier: 113475898
GI number: 113475898
Start: 3514663
End: 3515331
Strand: Direct
Name: 113475898
Synonym: Tery_2258
Alternate gene names: NA
Gene position: 3514663-3515331 (Clockwise)
Preceding gene: 113475897
Following gene: 113475900
Centisome position: 45.35
GC content: 32.74
Gene sequence:
>669_bases ATGAGCAAACTCAAAAACAAATGGCTGGAAAATGGGGAAATTATAGTCGTTTTACTATTAGTAGAGGTTTTAAAAAAATT GGTTTTACTCCTAAAAAAAACATCTGGTTATCAAGAAAGAGATGAATTAGAAATAGAAGAGTTCATGTTGAAACTAAATC AAATAGACAACAAAAGTATTGTCTATGTAGATGAAGCCGGAATAGATAATCGGGAAGATTATTCCTATGATTATGGAGTT AAAGGAAAAAGATTACCAGGTATGAAGTTAGGAAAAAGGACTGAGAGAGTAAGTTGGATTGCAGCTATAAATCAAGAAAA AATGTTTGCTTCTTTAACATTTATAAGAAGTTGTAATCGTGATTTATTTGAGAACTGGTTGGAACATTGTTTACTACCAA AATTACACCCAGGGCAAGTGATCATAGTGGATAACGCAACGTTTCATAAGTCAGTTGATATTGAAGAATTAGTAGCTAAA GTCAAGTGTGAAATCTGGTATCTACCACCTTACTCACCAGATTTTAACAAGATAGAACGTTGGTGGTTTGTACTAAAAAA TTGGATCAGACCAAGACTCAAAGAATTTAAGAATTTTAGAGACTGTGTAGATGCAGCTTTCATAATCCAATCCTCAAGTT TTTTCCTAGGGAGCAAAGATATGCTATAG
Upstream 100 bases:
>100_bases TTAACCACAGGCTCAATAGTCCCTAAGGCCAATGTACCTCCTCCTCAAATATCTAAAATTAAAGATTGGGAAGAATTTGA AAAATTTCTTGAGGCTAATC
Downstream 100 bases:
>100_bases AAATAATTAGTGTAGTTGCTCTTTGAGACGCTTGCTATCACACAAGAATGTGATTTTTGACTTGTCTGTTAAATCAACAG GATTTACGCATAACCACTAT
Product: hypothetical protein
Products: NA
Alternate protein names: Transposase Of Insertion Sequence; Transposase And Inactivated Derivatives-Like Protein; Insertion Sequence Transposase Protein; Transposase For Insertion Sequence Element; LOW QUALITY PROTEIN Transposase; Degenerate Transposase; Transposase Family Protein; ISRin2 Transposase OrfB; ISSoc4 Transposase OrfAB; ISHde1 Transposase OrfB; Transposase And Inactivated Derivative; Transposase Fragment
Number of amino acids: Translated: 222; Mature: 221
Protein sequence:
>222_residues MSKLKNKWLENGEIIVVLLLVEVLKKLVLLLKKTSGYQERDELEIEEFMLKLNQIDNKSIVYVDEAGIDNREDYSYDYGV KGKRLPGMKLGKRTERVSWIAAINQEKMFASLTFIRSCNRDLFENWLEHCLLPKLHPGQVIIVDNATFHKSVDIEELVAK VKCEIWYLPPYSPDFNKIERWWFVLKNWIRPRLKEFKNFRDCVDAAFIIQSSSFFLGSKDML
Sequences:
>Translated_222_residues MSKLKNKWLENGEIIVVLLLVEVLKKLVLLLKKTSGYQERDELEIEEFMLKLNQIDNKSIVYVDEAGIDNREDYSYDYGV KGKRLPGMKLGKRTERVSWIAAINQEKMFASLTFIRSCNRDLFENWLEHCLLPKLHPGQVIIVDNATFHKSVDIEELVAK VKCEIWYLPPYSPDFNKIERWWFVLKNWIRPRLKEFKNFRDCVDAAFIIQSSSFFLGSKDML >Mature_221_residues SKLKNKWLENGEIIVVLLLVEVLKKLVLLLKKTSGYQERDELEIEEFMLKLNQIDNKSIVYVDEAGIDNREDYSYDYGVK GKRLPGMKLGKRTERVSWIAAINQEKMFASLTFIRSCNRDLFENWLEHCLLPKLHPGQVIIVDNATFHKSVDIEELVAKV KCEIWYLPPYSPDFNKIERWWFVLKNWIRPRLKEFKNFRDCVDAAFIIQSSSFFLGSKDML
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26199; Mature: 26068
Theoretical pI: Translated: 8.29; Mature: 8.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLKNKWLENGEIIVVLLLVEVLKKLVLLLKKTSGYQERDELEIEEFMLKLNQIDNKSI CCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEE VYVDEAGIDNREDYSYDYGVKGKRLPGMKLGKRTERVSWIAAINQEKMFASLTFIRSCNR EEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHCHHHHHHHHHHHHHCCH DLFENWLEHCLLPKLHPGQVIIVDNATFHKSVDIEELVAKVKCEIWYLPPYSPDFNKIER HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHEEEEECCCCCCCHHHHHH WWFVLKNWIRPRLKEFKNFRDCVDAAFIIQSSSFFLGSKDML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SKLKNKWLENGEIIVVLLLVEVLKKLVLLLKKTSGYQERDELEIEEFMLKLNQIDNKSI CCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEE VYVDEAGIDNREDYSYDYGVKGKRLPGMKLGKRTERVSWIAAINQEKMFASLTFIRSCNR EEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHCHHHHHHHHHHHHHCCH DLFENWLEHCLLPKLHPGQVIIVDNATFHKSVDIEELVAKVKCEIWYLPPYSPDFNKIER HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHEEEEECCCCCCCHHHHHH WWFVLKNWIRPRLKEFKNFRDCVDAAFIIQSSSFFLGSKDML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA