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The map label for this gene is ynhG [H]

Identifier: 113475770

GI number: 113475770

Start: 3319524

End: 3320183

Strand: Direct

Name: ynhG [H]

Synonym: Tery_2123

Alternate gene names: 113475770

Gene position: 3319524-3320183 (Clockwise)

Preceding gene: 113475769

Following gene: 113475771

Centisome position: 42.83

GC content: 32.42

Gene sequence:

>660_bases
ATGAAAAAGTTAGTAATAAAAACTTTAAAATGTGAAAATATTATTTCAACCTATATAAAATTTAGTAATTTATACAGACT
AATATTTTTAAGTTTAGGAATAGTTCTTGTAATCAGTTGGACACAGCAACAAGTTTATGGCTATACTCCAATCAAAAATA
AATCTGTAGTTGATACAAATGGGAAAAAATTAATCGCAAAAACTCCCAAGATAAAGCCAAAATCAATAACTATAAAAAAA
GCACTAAATAAACTTTATATTAAACCTAATGAAACAATTTCTTTAGTCATAAAATTAAGCGATCGCCGTGTCTATGTCTA
TAAAAATGACCAATTAAAAACCAGCTACCCAATAGCTATTGGTAAAGAAGGATGGGAAACTCCCACAGGAACCCATAAAG
TTATCCAAAAAATACCAAATCCTTCTTGGACACATCCCTTTACAGGAGAAATCATACCTCCTGGACCAGAAAATCCTTTG
GGGGAAAGATGGATTGGTTTTTGGACAGATGGCACGAATTATATAGGTTTTCATGGAACCCCTAACGAAGAAACTGTAGG
ACAAGCAGCCTCTCATGGTTGTGTGAGAATGTTCAACCAAGATGTGCTAGATCTATTTGAAAAAGTAACCATTGGTACAA
TTGTCGTAGTAGAACCTTAA

Upstream 100 bases:

>100_bases
AATAGTTTCTTTTATTATGTTAATATAAACAGTTATTTATTGGCAACTGCTTCCCAAAAAATAATTCTAATATTTTTGTA
GTTTAGGATATACTTCTTGT

Downstream 100 bases:

>100_bases
AAAAATACAAGTAAAGTTTAATTAAAACATTTTTAATATCCGAATTGTATTAAAATATTATCTCACTAGTTTTCAGCTAA
CTAATTAAGTGGGATATTTG

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKKLVIKTLKCENIISTYIKFSNLYRLIFLSLGIVLVISWTQQQVYGYTPIKNKSVVDTNGKKLIAKTPKIKPKSITIKK
ALNKLYIKPNETISLVIKLSDRRVYVYKNDQLKTSYPIAIGKEGWETPTGTHKVIQKIPNPSWTHPFTGEIIPPGPENPL
GERWIGFWTDGTNYIGFHGTPNEETVGQAASHGCVRMFNQDVLDLFEKVTIGTIVVVEP

Sequences:

>Translated_219_residues
MKKLVIKTLKCENIISTYIKFSNLYRLIFLSLGIVLVISWTQQQVYGYTPIKNKSVVDTNGKKLIAKTPKIKPKSITIKK
ALNKLYIKPNETISLVIKLSDRRVYVYKNDQLKTSYPIAIGKEGWETPTGTHKVIQKIPNPSWTHPFTGEIIPPGPENPL
GERWIGFWTDGTNYIGFHGTPNEETVGQAASHGCVRMFNQDVLDLFEKVTIGTIVVVEP
>Mature_219_residues
MKKLVIKTLKCENIISTYIKFSNLYRLIFLSLGIVLVISWTQQQVYGYTPIKNKSVVDTNGKKLIAKTPKIKPKSITIKK
ALNKLYIKPNETISLVIKLSDRRVYVYKNDQLKTSYPIAIGKEGWETPTGTHKVIQKIPNPSWTHPFTGEIIPPGPENPL
GERWIGFWTDGTNYIGFHGTPNEETVGQAASHGCVRMFNQDVLDLFEKVTIGTIVVVEP

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787968, Length=137, Percent_Identity=36.4963503649635, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787040, Length=161, Percent_Identity=34.1614906832298, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787356, Length=138, Percent_Identity=34.7826086956522, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788299, Length=141, Percent_Identity=32.6241134751773, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 24729; Mature: 24729

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLVIKTLKCENIISTYIKFSNLYRLIFLSLGIVLVISWTQQQVYGYTPIKNKSVVDTN
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHEEECCCCCCCEEEECC
GKKLIAKTPKIKPKSITIKKALNKLYIKPNETISLVIKLSDRRVYVYKNDQLKTSYPIAI
CCEEEEECCCCCCCEEEHHHHHHHEECCCCCEEEEEEEEECCEEEEEECCCCCEECCEEE
GKEGWETPTGTHKVIQKIPNPSWTHPFTGEIIPPGPENPLGERWIGFWTDGTNYIGFHGT
CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCEEEEECCC
PNEETVGQAASHGCVRMFNQDVLDLFEKVTIGTIVVVEP
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEEEC
>Mature Secondary Structure
MKKLVIKTLKCENIISTYIKFSNLYRLIFLSLGIVLVISWTQQQVYGYTPIKNKSVVDTN
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHEEECCCCCCCEEEECC
GKKLIAKTPKIKPKSITIKKALNKLYIKPNETISLVIKLSDRRVYVYKNDQLKTSYPIAI
CCEEEEECCCCCCCEEEHHHHHHHEECCCCCEEEEEEEEECCEEEEEECCCCCEECCEEE
GKEGWETPTGTHKVIQKIPNPSWTHPFTGEIIPPGPENPLGERWIGFWTDGTNYIGFHGT
CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCEEEEECCC
PNEETVGQAASHGCVRMFNQDVLDLFEKVTIGTIVVVEP
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097039 [H]