| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475769
Identifier: 113475769
GI number: 113475769
Start: 3317630
End: 3318853
Strand: Direct
Name: 113475769
Synonym: Tery_2122
Alternate gene names: NA
Gene position: 3317630-3318853 (Clockwise)
Preceding gene: 113475764
Following gene: 113475770
Centisome position: 42.81
GC content: 32.68
Gene sequence:
>1224_bases ATGTTGCCAAACGACTTACTTTCTCATCGTCAAATTGGAGAAACAATCATTCCTCAAAAGCTAAAAATAGATGCCAAAAA TTTAACTATTGCCATGGAAATGATTAATTGTTTCCAAGAAACATTGGGAAAAACCCAAGGAAAACTTGATAAACGTTTAC AGTCAATTGAAGGGGATGACACTAATTATCGCTTTAAACGAGGATTAGCACATATTCTCAGAGGCAGTTTTTCTACTTTT GAAATAATGAGTCCTCTTGAACCGATAGAATTAAGAAATCGTGTTTTTGCTATGGCAGCAGAAGTTGCTCCTAGTATTAG AGCGACACAATTAACTTTAGAGAATTTAGCAACTAAATTAAGTCAGGAGTTAAACCAAGAAGTTGTACCTGATGAAATTA AAAAAGGTCTCTATGCAGACTTACAAGAAAATCGAATTTTGACTCAATTTGATGCTCCTAAACCAGAAGATTTATTACAT AGATATAACCTTTCTCAAGTTCAAGGTATTTTTTATAAAGCTAGTCATATTAAATTAAATGCTTATCGCAACGATCCAGG AGAATATAAACTGTTATTTAGATATGTGAAATTATTTCAATTAATGACTTATATTGAAGGAGATGCCGACAAAGGTTTTA CTCTTACAATAGACGGTCCCTATAGTTTATTTAAACCTAGCATTCGTTATGGTTTAGCATTAGCAAAAATGTTGCCGGCA TTATTGCATGTTACTAAATGGAATTTACACGCAACTTTACAAAATCGTGACCCTTTTAGTGGAGCTTGGAAAACAGGTAT ATTTAGTCTTAATTCTGATTGTGATTTAGTTAGTCATTATCCACCAGGAAAACCTTATGATAGTATGTTAGAAGCATCAT TTGCAGAACGTTGGGCAAAGTTAAAAACTAAGTGGAAATTAGAAAGGGAAGTTGATTTAATTCCTATTCCTGGTAGTGTC ATGATTCCTGATTTTAGACTAATTCATCCTAACGGAGTATCATATTTATTGGAAATAATTGGATATTGGCGACCAGAATA TTTAAGAAAGAAATTTGCTCAGGTGCGTAGTGCTAAATGTGATAATTTAATATTGGCTATTTCTGAACGATTAAATTTAG AAAAGGCGGGTGTAAATGTCAAAGATGTATCAGTGCCTATTGTGTGGTTTAAGAATAAGTTATTACCTAAGTCAGTGTTG GAAATTTTAGACTCTATTGAGTAG
Upstream 100 bases:
>100_bases CTGTTTATACTGATAATAATAATAATATTAAAGTAATTATATAATTATAAATATATACTTTATAATAAATGCTAAAATTT TGTAATAAAAATCGTAAATT
Downstream 100 bases:
>100_bases ATTATATAACCCTAAAGATAAGTCAAAATTTCTCTTTTTCAAGTTGATAAAATTAACATAATTCGATACTTTTAATTGTT AAAAATATTAAGCACCTAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 407; Mature: 407
Protein sequence:
>407_residues MLPNDLLSHRQIGETIIPQKLKIDAKNLTIAMEMINCFQETLGKTQGKLDKRLQSIEGDDTNYRFKRGLAHILRGSFSTF EIMSPLEPIELRNRVFAMAAEVAPSIRATQLTLENLATKLSQELNQEVVPDEIKKGLYADLQENRILTQFDAPKPEDLLH RYNLSQVQGIFYKASHIKLNAYRNDPGEYKLLFRYVKLFQLMTYIEGDADKGFTLTIDGPYSLFKPSIRYGLALAKMLPA LLHVTKWNLHATLQNRDPFSGAWKTGIFSLNSDCDLVSHYPPGKPYDSMLEASFAERWAKLKTKWKLEREVDLIPIPGSV MIPDFRLIHPNGVSYLLEIIGYWRPEYLRKKFAQVRSAKCDNLILAISERLNLEKAGVNVKDVSVPIVWFKNKLLPKSVL EILDSIE
Sequences:
>Translated_407_residues MLPNDLLSHRQIGETIIPQKLKIDAKNLTIAMEMINCFQETLGKTQGKLDKRLQSIEGDDTNYRFKRGLAHILRGSFSTF EIMSPLEPIELRNRVFAMAAEVAPSIRATQLTLENLATKLSQELNQEVVPDEIKKGLYADLQENRILTQFDAPKPEDLLH RYNLSQVQGIFYKASHIKLNAYRNDPGEYKLLFRYVKLFQLMTYIEGDADKGFTLTIDGPYSLFKPSIRYGLALAKMLPA LLHVTKWNLHATLQNRDPFSGAWKTGIFSLNSDCDLVSHYPPGKPYDSMLEASFAERWAKLKTKWKLEREVDLIPIPGSV MIPDFRLIHPNGVSYLLEIIGYWRPEYLRKKFAQVRSAKCDNLILAISERLNLEKAGVNVKDVSVPIVWFKNKLLPKSVL EILDSIE >Mature_407_residues MLPNDLLSHRQIGETIIPQKLKIDAKNLTIAMEMINCFQETLGKTQGKLDKRLQSIEGDDTNYRFKRGLAHILRGSFSTF EIMSPLEPIELRNRVFAMAAEVAPSIRATQLTLENLATKLSQELNQEVVPDEIKKGLYADLQENRILTQFDAPKPEDLLH RYNLSQVQGIFYKASHIKLNAYRNDPGEYKLLFRYVKLFQLMTYIEGDADKGFTLTIDGPYSLFKPSIRYGLALAKMLPA LLHVTKWNLHATLQNRDPFSGAWKTGIFSLNSDCDLVSHYPPGKPYDSMLEASFAERWAKLKTKWKLEREVDLIPIPGSV MIPDFRLIHPNGVSYLLEIIGYWRPEYLRKKFAQVRSAKCDNLILAISERLNLEKAGVNVKDVSVPIVWFKNKLLPKSVL EILDSIE
Specific function: Unknown
COG id: COG3372
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46596; Mature: 46596
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPNDLLSHRQIGETIIPQKLKIDAKNLTIAMEMINCFQETLGKTQGKLDKRLQSIEGDD CCCHHHHHHHHHCHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TNYRFKRGLAHILRGSFSTFEIMSPLEPIELRNRVFAMAAEVAPSIRATQLTLENLATKL CCHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH SQELNQEVVPDEIKKGLYADLQENRILTQFDAPKPEDLLHRYNLSQVQGIFYKASHIKLN HHHHCCCCCCHHHHCCHHHHHHCCEEEEECCCCCHHHHHHHCCHHHHHHHEEEEEEEEEE AYRNDPGEYKLLFRYVKLFQLMTYIEGDADKGFTLTIDGPYSLFKPSIRYGLALAKMLPA EEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHCHHHHHHHHHHHHHHH LLHVTKWNLHATLQNRDPFSGAWKTGIFSLNSDCDLVSHYPPGKPYDSMLEASFAERWAK HHHHHHCEEEEEECCCCCCCCCHHHCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH LKTKWKLEREVDLIPIPGSVMIPDFRLIHPNGVSYLLEIIGYWRPEYLRKKFAQVRSAKC HHHHHEECCCCEEEECCCCEECCCEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCC DNLILAISERLNLEKAGVNVKDVSVPIVWFKNKLLPKSVLEILDSIE CCCEEEHHHHCCHHHCCCCEEECEEEEEECCCCCCHHHHHHHHHCCC >Mature Secondary Structure MLPNDLLSHRQIGETIIPQKLKIDAKNLTIAMEMINCFQETLGKTQGKLDKRLQSIEGDD CCCHHHHHHHHHCHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TNYRFKRGLAHILRGSFSTFEIMSPLEPIELRNRVFAMAAEVAPSIRATQLTLENLATKL CCHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH SQELNQEVVPDEIKKGLYADLQENRILTQFDAPKPEDLLHRYNLSQVQGIFYKASHIKLN HHHHCCCCCCHHHHCCHHHHHHCCEEEEECCCCCHHHHHHHCCHHHHHHHEEEEEEEEEE AYRNDPGEYKLLFRYVKLFQLMTYIEGDADKGFTLTIDGPYSLFKPSIRYGLALAKMLPA EEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHCHHHHHHHHHHHHHHH LLHVTKWNLHATLQNRDPFSGAWKTGIFSLNSDCDLVSHYPPGKPYDSMLEASFAERWAK HHHHHHCEEEEEECCCCCCCCCHHHCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH LKTKWKLEREVDLIPIPGSVMIPDFRLIHPNGVSYLLEIIGYWRPEYLRKKFAQVRSAKC HHHHHEECCCCEEEECCCCEECCCEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCC DNLILAISERLNLEKAGVNVKDVSVPIVWFKNKLLPKSVLEILDSIE CCCEEEHHHHCCHHHCCCCEEECEEEEEECCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA