| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475688
Identifier: 113475688
GI number: 113475688
Start: 3159119
End: 3160816
Strand: Direct
Name: 113475688
Synonym: Tery_2032
Alternate gene names: NA
Gene position: 3159119-3160816 (Clockwise)
Preceding gene: 113475686
Following gene: 113475689
Centisome position: 40.76
GC content: 30.68
Gene sequence:
>1698_bases ATGAAACTGCAATCATTAAAAGCAAAATTTATTTCATTTTCCTTAGGATTAAGCATATTATCACCTATTTTTACTCCTAT TCTTGCTATTGCGGCTGAACAAATTATAATTTCTGTTCCCGATATAAATATTAAAAATCCAATAGAAGTTTATATCCGAG ATTTTCAAATTAAAATATTAGTAAAATCTCTAGAAAACTTGGCTGAAGAAGGTAAACAGACAGAAGAATTTAATCTTTAT TCGGAACTACTAAAAGAAGAAGTATATGAAGTTCTGCAAAAGCCTTTTAACTTAGATCCTACTTTTGTAGAAGCTTTTAT GAAAGAACCAATGGGAAAAGAAATGCTAAAACGTTTAGGTAAAATTATCCAAACAGGAGACAAGCAAAATGGTAGTGAAG CTATCAAAAAATCCTTTCAGTTAGCTCTTGCAGATCCAAATGGTTTAACTATTATTAATTTACTTAATAAATTTCCTGGA GATATTTTTATAGAATTACAAGAAGGTGTGAATTTAGTTGATGAGTTAATAAAAAATTTTGTAGAAAAAAATAGAATTTT AACAGGATTACAAAGACAAGCAGAAGATTTAGCATTAGCAGAAAAAAAACGTAATTTTAAGTTTTTTCCAGACTTAAGAA TGCCTGGGAATATAACATTCAAAAAACAATCTTTTAGCTTTAGAAATCCCTATCGTAAACGATCTTCTCCTGTAGATATT TATCTGCCTAATATTTCTGGAAATAACTTAATTCCTGTGGTAGTTATTTCTCATGGTTTAGGTTCAGATATAAGTAGTTT TGTCTATCTTGCTAAACATTTAGCATCTCATGGTTTTGCTGTAATAGTACCAAAACATATTGGTTCAGATGCAGAAAAAC TTGAAAAAATGTTTGCAGGTCTTAGCAGACCTGTAGATGGGATGACATTTATTAATCGCCCACTAGATATTAAGTATTCG CTAGATGAAATAGAAGAAAAAATAGGATCCGACCCTATATGGCAAGGTAAGCTAAATTTTCAAAACGTAGGGATAATAGG TCAATCTTTTGGTGGTTATACTGCTTTAAGTGTTGCAGGTGCTCCTCTCAACATCAAACAACTAAGTAAAGACTGCCAAT CTGAAGATATTCAGTTAATCTTAAATTTATCCCTGTTGTTCCAGTGTCAAATGACTGATTTAGCGAAAGAAGTTACTCCC AGTTTAGCAGATGAAAGAATCAAAGCAGTTATTGCAATTAATCCTATTAGTAGTATTTTATTTAGAACTGACAGTCAAGG TATGAGTAAAGATATGAGTGAAATTAAAGTTCCTGTGATGATTATTACCGGCACTGAAGACTTATTTGCTCAGCCAATTC CAGAGCAAATTTATCCATTTATTAGCTTAACTACCCCAGAAAAATATTTAGTTATAAGTAAACCAGGAACTCATTTTTCA TTTATTCAAGAAGAAGAGAATGTTCCTGTAGAACTACCAAAAAAATTAATTGGTCCTGACCCTAATTTAGCTTATCCATA TCTTCAGGCATTAAGTGTAGCTTTCTTTCGGGTTTATATTCAAAATCAATCTGAGTCATTACTATATTTAAGTGAGTCTT ATCTACAGTATCTCAATCAAGAACCATTTACTTTTAGTTTACTGAAATCTCTTACAGAAGTTGATATACAAAAAGTGCTT GAGAGTTATTATGAATAA
Upstream 100 bases:
>100_bases TTTCATGATAATAGAAAGTATTTAAGAACAATGATTATATTACCATTCCCACACTTTCTTGATGCACTACGACTTTATTC ATATAATTTAGGAGTTATTG
Downstream 100 bases:
>100_bases GCTGCATATAAGTAATACTAATTTTATTAAATTAGTGTATACTATTTATATTGTTTAGATTATATGATTTCATTATTGAG CTTTTGTGTTTAGCTAGACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 565; Mature: 565
Protein sequence:
>565_residues MKLQSLKAKFISFSLGLSILSPIFTPILAIAAEQIIISVPDINIKNPIEVYIRDFQIKILVKSLENLAEEGKQTEEFNLY SELLKEEVYEVLQKPFNLDPTFVEAFMKEPMGKEMLKRLGKIIQTGDKQNGSEAIKKSFQLALADPNGLTIINLLNKFPG DIFIELQEGVNLVDELIKNFVEKNRILTGLQRQAEDLALAEKKRNFKFFPDLRMPGNITFKKQSFSFRNPYRKRSSPVDI YLPNISGNNLIPVVVISHGLGSDISSFVYLAKHLASHGFAVIVPKHIGSDAEKLEKMFAGLSRPVDGMTFINRPLDIKYS LDEIEEKIGSDPIWQGKLNFQNVGIIGQSFGGYTALSVAGAPLNIKQLSKDCQSEDIQLILNLSLLFQCQMTDLAKEVTP SLADERIKAVIAINPISSILFRTDSQGMSKDMSEIKVPVMIITGTEDLFAQPIPEQIYPFISLTTPEKYLVISKPGTHFS FIQEEENVPVELPKKLIGPDPNLAYPYLQALSVAFFRVYIQNQSESLLYLSESYLQYLNQEPFTFSLLKSLTEVDIQKVL ESYYE
Sequences:
>Translated_565_residues MKLQSLKAKFISFSLGLSILSPIFTPILAIAAEQIIISVPDINIKNPIEVYIRDFQIKILVKSLENLAEEGKQTEEFNLY SELLKEEVYEVLQKPFNLDPTFVEAFMKEPMGKEMLKRLGKIIQTGDKQNGSEAIKKSFQLALADPNGLTIINLLNKFPG DIFIELQEGVNLVDELIKNFVEKNRILTGLQRQAEDLALAEKKRNFKFFPDLRMPGNITFKKQSFSFRNPYRKRSSPVDI YLPNISGNNLIPVVVISHGLGSDISSFVYLAKHLASHGFAVIVPKHIGSDAEKLEKMFAGLSRPVDGMTFINRPLDIKYS LDEIEEKIGSDPIWQGKLNFQNVGIIGQSFGGYTALSVAGAPLNIKQLSKDCQSEDIQLILNLSLLFQCQMTDLAKEVTP SLADERIKAVIAINPISSILFRTDSQGMSKDMSEIKVPVMIITGTEDLFAQPIPEQIYPFISLTTPEKYLVISKPGTHFS FIQEEENVPVELPKKLIGPDPNLAYPYLQALSVAFFRVYIQNQSESLLYLSESYLQYLNQEPFTFSLLKSLTEVDIQKVL ESYYE >Mature_565_residues MKLQSLKAKFISFSLGLSILSPIFTPILAIAAEQIIISVPDINIKNPIEVYIRDFQIKILVKSLENLAEEGKQTEEFNLY SELLKEEVYEVLQKPFNLDPTFVEAFMKEPMGKEMLKRLGKIIQTGDKQNGSEAIKKSFQLALADPNGLTIINLLNKFPG DIFIELQEGVNLVDELIKNFVEKNRILTGLQRQAEDLALAEKKRNFKFFPDLRMPGNITFKKQSFSFRNPYRKRSSPVDI YLPNISGNNLIPVVVISHGLGSDISSFVYLAKHLASHGFAVIVPKHIGSDAEKLEKMFAGLSRPVDGMTFINRPLDIKYS LDEIEEKIGSDPIWQGKLNFQNVGIIGQSFGGYTALSVAGAPLNIKQLSKDCQSEDIQLILNLSLLFQCQMTDLAKEVTP SLADERIKAVIAINPISSILFRTDSQGMSKDMSEIKVPVMIITGTEDLFAQPIPEQIYPFISLTTPEKYLVISKPGTHFS FIQEEENVPVELPKKLIGPDPNLAYPYLQALSVAFFRVYIQNQSESLLYLSESYLQYLNQEPFTFSLLKSLTEVDIQKVL ESYYE
Specific function: Unknown
COG id: COG4188
COG function: function code R; Predicted dienelactone hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63655; Mature: 63655
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLQSLKAKFISFSLGLSILSPIFTPILAIAAEQIIISVPDINIKNPIEVYIRDFQIKIL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHEEEHHHHHHH VKSLENLAEEGKQTEEFNLYSELLKEEVYEVLQKPFNLDPTFVEAFMKEPMGKEMLKRLG HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHH KIIQTGDKQNGSEAIKKSFQLALADPNGLTIINLLNKFPGDIFIELQEGVNLVDELIKNF HHHHCCCCCCHHHHHHHHHEEEEECCCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHH VEKNRILTGLQRQAEDLALAEKKRNFKFFPDLRMPGNITFKKQSFSFRNPYRKRSSPVDI HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCEE YLPNISGNNLIPVVVISHGLGSDISSFVYLAKHLASHGFAVIVPKHIGSDAEKLEKMFAG EECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECHHCCCCHHHHHHHHHH LSRPVDGMTFINRPLDIKYSLDEIEEKIGSDPIWQGKLNFQNVGIIGQSFGGYTALSVAG HCCCCCCHHHHCCCCCEEECHHHHHHHHCCCCCEECCCCCCEECEEECCCCCEEEEEECC APLNIKQLSKDCQSEDIQLILNLSLLFQCQMTDLAKEVTPSLADERIKAVIAINPISSIL CCCCHHHHHHHCCCCCHHHHEEHHHHHEEHHHHHHHHHCHHHHHHHEEEEEEECHHHHHH FRTDSQGMSKDMSEIKVPVMIITGTEDLFAQPIPEQIYPFISLTTPEKYLVISKPGTHFS EECCCCCHHCCHHHCCCCEEEEECCHHHHCCCCCHHHCCCEEECCCCEEEEEECCCCCEE FIQEEENVPVELPKKLIGPDPNLAYPYLQALSVAFFRVYIQNQSESLLYLSESYLQYLNQ HEECCCCCCHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCC EPFTFSLLKSLTEVDIQKVLESYYE CCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKLQSLKAKFISFSLGLSILSPIFTPILAIAAEQIIISVPDINIKNPIEVYIRDFQIKIL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHEEEHHHHHHH VKSLENLAEEGKQTEEFNLYSELLKEEVYEVLQKPFNLDPTFVEAFMKEPMGKEMLKRLG HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHH KIIQTGDKQNGSEAIKKSFQLALADPNGLTIINLLNKFPGDIFIELQEGVNLVDELIKNF HHHHCCCCCCHHHHHHHHHEEEEECCCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHH VEKNRILTGLQRQAEDLALAEKKRNFKFFPDLRMPGNITFKKQSFSFRNPYRKRSSPVDI HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCEE YLPNISGNNLIPVVVISHGLGSDISSFVYLAKHLASHGFAVIVPKHIGSDAEKLEKMFAG EECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECHHCCCCHHHHHHHHHH LSRPVDGMTFINRPLDIKYSLDEIEEKIGSDPIWQGKLNFQNVGIIGQSFGGYTALSVAG HCCCCCCHHHHCCCCCEEECHHHHHHHHCCCCCEECCCCCCEECEEECCCCCEEEEEECC APLNIKQLSKDCQSEDIQLILNLSLLFQCQMTDLAKEVTPSLADERIKAVIAINPISSIL CCCCHHHHHHHCCCCCHHHHEEHHHHHEEHHHHHHHHHCHHHHHHHEEEEEEECHHHHHH FRTDSQGMSKDMSEIKVPVMIITGTEDLFAQPIPEQIYPFISLTTPEKYLVISKPGTHFS EECCCCCHHCCHHHCCCCEEEEECCHHHHCCCCCHHHCCCEEECCCCEEEEEECCCCCEE FIQEEENVPVELPKKLIGPDPNLAYPYLQALSVAFFRVYIQNQSESLLYLSESYLQYLNQ HEECCCCCCHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCC EPFTFSLLKSLTEVDIQKVLESYYE CCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA