Click here to switch to the map view.

The map label for this gene is aapJ [H]

Identifier: 113475659

GI number: 113475659

Start: 3112190

End: 3113221

Strand: Direct

Name: aapJ [H]

Synonym: Tery_1998

Alternate gene names: 113475659

Gene position: 3112190-3113221 (Clockwise)

Preceding gene: 113475658

Following gene: 113475660

Centisome position: 40.16

GC content: 39.34

Gene sequence:

>1032_bases
ATGATAATACCAATTACAGCTTGTGAAGTTGAAGGTACATCAGACCAAAAAGAAGTTACTCAGGAAAATAAACAAGTCAC
TAGTCGTTTAGATATTGTCAAAAATCGTGGTAAACTGATCTGTGGTGTAGAAGGTGGTATTCCTGGATTCAGTTTTGTAG
ACAAGAATGGTAACTACTCAGGAATAGATGTAGATATCTGTAAGGCGGTAGCGGCGGCATTATTCAATGATCCAAATCTA
GTAGAGTATCGTAACTTAGATTCAACGGAGCGTTTTACTGCTCTTAACGGTGGGGAAGTAGATATGCTTTCTCGCAACAC
AACATGGACTGTTAGTCGAGATACTACTGTTGGTCTTGAGTTTGCCCCTACTACATTTTATGATGGTCAAGGCATGATGG
TTCGTGCTAATAGTGGAGTTGAATCTTTAGAGGACTTGCAAGGCAAATCAATTTGTGTCGAAGCAGGGACAACTACAGAA
TTAAACTTAACAGATAATCTCCGCCAACGAAATGTGACAGCTGAGACATTAACGTTTCAACAAGCAGACCCAGCTTATGC
AGCTTATGCTGAAGGGCGTTGTGATGGGATGACTTCTGATAAGTCTCAATTATTGAGTCGTCGTAGTACTCTACCAAGTC
CAAATGATCATGTTATTCTACAGGTCACTATGTCCAAAGAGCCTTTAGGTCCAGTCACAAAAAATAATGATTCTGCTTGG
TTTGACGTGGTTAAATGGGTGACTTATGCTTTAATAGAAGCTGAAGAGTTAGGTATTACTCAAGAAAATGTAGATGACTT
GAAGCAAAATTCTGATAACCCTACTATAAGGCGCTTTTTAGGAGTAGATGGAGACCTGGGTGAAGGTTTGGGTTTAAGCA
ATGATTTTGCTTATAGAGTAATTAAGAATGTTGGAAACTACGCTGAAGTCTATGATCGTAACTTAGGAGAAGAATCTCAG
TTTAAGTTACCTCGGGGTATGAATAATTTATGGACGAAGGGTGGTTTGCTTTATTCTCCTCCATTCCGTTAG

Upstream 100 bases:

>100_bases
ATTTTCAGATTATGGTAGCTTTAAGTAGGTTATTTTTCTCAAAACAAAAAAATCATAATTAACTATGAAAAAATGGCAGT
CTATAATAGCAGCTTTGTTG

Downstream 100 bases:

>100_bases
ATATCAAAAAAAGTAAAGATTTGGGAGTTAACCTAAGCTCAATTTCCCAAATCTTTAATAAGTTTAGCTGGTCTCTATAG
ATTTTGGATTAAGTTAGGAA

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MIIPITACEVEGTSDQKEVTQENKQVTSRLDIVKNRGKLICGVEGGIPGFSFVDKNGNYSGIDVDICKAVAAALFNDPNL
VEYRNLDSTERFTALNGGEVDMLSRNTTWTVSRDTTVGLEFAPTTFYDGQGMMVRANSGVESLEDLQGKSICVEAGTTTE
LNLTDNLRQRNVTAETLTFQQADPAYAAYAEGRCDGMTSDKSQLLSRRSTLPSPNDHVILQVTMSKEPLGPVTKNNDSAW
FDVVKWVTYALIEAEELGITQENVDDLKQNSDNPTIRRFLGVDGDLGEGLGLSNDFAYRVIKNVGNYAEVYDRNLGEESQ
FKLPRGMNNLWTKGGLLYSPPFR

Sequences:

>Translated_343_residues
MIIPITACEVEGTSDQKEVTQENKQVTSRLDIVKNRGKLICGVEGGIPGFSFVDKNGNYSGIDVDICKAVAAALFNDPNL
VEYRNLDSTERFTALNGGEVDMLSRNTTWTVSRDTTVGLEFAPTTFYDGQGMMVRANSGVESLEDLQGKSICVEAGTTTE
LNLTDNLRQRNVTAETLTFQQADPAYAAYAEGRCDGMTSDKSQLLSRRSTLPSPNDHVILQVTMSKEPLGPVTKNNDSAW
FDVVKWVTYALIEAEELGITQENVDDLKQNSDNPTIRRFLGVDGDLGEGLGLSNDFAYRVIKNVGNYAEVYDRNLGEESQ
FKLPRGMNNLWTKGGLLYSPPFR
>Mature_343_residues
MIIPITACEVEGTSDQKEVTQENKQVTSRLDIVKNRGKLICGVEGGIPGFSFVDKNGNYSGIDVDICKAVAAALFNDPNL
VEYRNLDSTERFTALNGGEVDMLSRNTTWTVSRDTTVGLEFAPTTFYDGQGMMVRANSGVESLEDLQGKSICVEAGTTTE
LNLTDNLRQRNVTAETLTFQQADPAYAAYAEGRCDGMTSDKSQLLSRRSTLPSPNDHVILQVTMSKEPLGPVTKNNDSAW
FDVVKWVTYALIEAEELGITQENVDDLKQNSDNPTIRRFLGVDGDLGEGLGLSNDFAYRVIKNVGNYAEVYDRNLGEESQ
FKLPRGMNNLWTKGGLLYSPPFR

Specific function: Part of a binding-protein-dependent transport system for L-amino acids, affects the uptake as well as efflux of these amino acids [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005768
- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 37785; Mature: 37785

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIPITACEVEGTSDQKEVTQENKQVTSRLDIVKNRGKLICGVEGGIPGFSFVDKNGNYS
CEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCC
GIDVDICKAVAAALFNDPNLVEYRNLDSTERFTALNGGEVDMLSRNTTWTVSRDTTVGLE
CCHHHHHHHHHHHHCCCCCEEEECCCCCCHHEEECCCCCEEEEECCCEEEEECCCEEEEE
FAPTTFYDGQGMMVRANSGVESLEDLQGKSICVEAGTTTELNLTDNLRQRNVTAETLTFQ
ECCCEEECCCEEEEEECCCHHHHHHCCCCEEEEECCCCEEEECCHHHHHCCCCHHEEEEE
QADPAYAAYAEGRCDGMTSDKSQLLSRRSTLPSPNDHVILQVTMSKEPLGPVTKNNDSAW
CCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCHHH
FDVVKWVTYALIEAEELGITQENVDDLKQNSDNPTIRRFLGVDGDLGEGLGLSNDFAYRV
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHH
IKNVGNYAEVYDRNLGEESQFKLPRGMNNLWTKGGLLYSPPFR
HHHCCCHHHHHHCCCCCCCCCCCCCCCHHHHHCCCEEECCCCC
>Mature Secondary Structure
MIIPITACEVEGTSDQKEVTQENKQVTSRLDIVKNRGKLICGVEGGIPGFSFVDKNGNYS
CEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCC
GIDVDICKAVAAALFNDPNLVEYRNLDSTERFTALNGGEVDMLSRNTTWTVSRDTTVGLE
CCHHHHHHHHHHHHCCCCCEEEECCCCCCHHEEECCCCCEEEEECCCEEEEECCCEEEEE
FAPTTFYDGQGMMVRANSGVESLEDLQGKSICVEAGTTTELNLTDNLRQRNVTAETLTFQ
ECCCEEECCCEEEEEECCCHHHHHHCCCCEEEEECCCCEEEECCHHHHHCCCCHHEEEEE
QADPAYAAYAEGRCDGMTSDKSQLLSRRSTLPSPNDHVILQVTMSKEPLGPVTKNNDSAW
CCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCHHH
FDVVKWVTYALIEAEELGITQENVDDLKQNSDNPTIRRFLGVDGDLGEGLGLSNDFAYRV
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHH
IKNVGNYAEVYDRNLGEESQFKLPRGMNNLWTKGGLLYSPPFR
HHHCCCHHHHHHCCCCCCCCCCCCCCCHHHHHCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8898392 [H]