Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475600

Identifier: 113475600

GI number: 113475600

Start: 2998586

End: 3000205

Strand: Direct

Name: 113475600

Synonym: Tery_1933

Alternate gene names: NA

Gene position: 2998586-3000205 (Clockwise)

Preceding gene: 113475595

Following gene: 113475601

Centisome position: 38.69

GC content: 34.32

Gene sequence:

>1620_bases
ATGTCCAAAAAATTAATGATAAAAAAGGCCAATAAACCGACATCAGAAATAGCAAAAGAAATTTTAGAAAATGATAATCG
AGAAAAAGAAGCGATCGCTATCCTATTAGACAAACATATAGGCAAAGACAATAGATTATTAGTACAAAAAACCATGATGG
GAAACACAGAAGCTTACATTGGTTCGGTCACTCTAGAATGGTTAGATAGTCGTGTACGCTTTGCCTCTCAACTACCATTA
TTTAGGCAAAAATTTGACATAGAAACTGATAATATAATTCGGGATTCAGAAACAATAGATGAAATTCAACAACGACCCTT
AGACTGGTCTCGTCAAGCTCCATTAACTTTATATTTAGCAACTAGAAAATCCCATAAATTTCCGGCAGTATTAGTAGTAA
TTAGTCCGAGTTGGGTAGATAATCCTAAGGCAGAAGAATGGAATAAAAATGGTGAAGCAAATAAATCTGCAACTGATTTT
TTTTCCCTAGATTCACAGGGAAAAGTAGGATTATTAGACCTACGTTTAGAAGTAGCAGTATTTGCCTTAGATGGTCAACA
TAGACTGATGGGAATTCAAGGATTAATGGAATTAATAAAAACTGGTAGATTACCAAGATATAACAAACAAAAGAAATCAG
TAGGTGCAGCAATTACTATTGATGATTTAACTATAACTCATCAGATTGAATTACCAGAAATACAAAAATTAGCTTACGAA
CAAATAGGAATAGAATTTATTCCAGCAGTAGTAAAAGGGGAGACAAGAGCACAAGCACGACGCAGAGTTAGGTCAGTTTT
TGCTCATGTAAATTTGACAGCAGTAAAATTAAGTAAAGGGCAATTAGCATTATTAAATGAAGATGATGGATTTGCTATTG
TAGCGAGAAAAATAGCAATTTATCATCCTATTTTAAAGGAGAAAGATGGTAGAAATCCAAGAATAAATTGGGATAGTGCA
ACTGTGGCAGCTAACTCTACTGTTTTAACTACTCTCCAAGCATTGCAAGAAATGTCTGAAAGATATTTAAAACCTCGTTA
TCCCTATTGGAAACCTTCAGATAGAGGTTTAATTCCTATGCGTCCTGCAGAAGAAGAGCTAGAAGAGGGGGTAGAAGAAT
TTATGGTACTTTGGAATTATTTGTCTAATTTGCCTAGTTATTCTAGATTAGAAAATGGCTCTGAAACTTCGGAATTAAGA
AGATTTAGTTTTGAGAGAAAACCGGGAGAAGGTCATGTTTTGTTCCGCCCTATTGGGCAAATTGCTTTTGCTGAAGCTTT
AGGGATTTTAATATATAAAAAAGAATTTTCTCTCAAAGAAGTTTTTCATAAATTAAATAAGTATGATGTGGATGGTGGTT
TGAGTGGAATAGAATTTCCTGACTCAATTTGGTATGGGGTTTTATATGATTTTAATCGGAAACGAATGTCGGTAGCTGGT
AGAGATTTAGCAATGAGATTATTTATCTATATATTAGGTGGAGTTTCTGACAAAATGGAGCGGGCAGAAGTTCGTCGGCA
GTTGGCGCAAGCAAGACGAGTTGGAGAGGATCAAGCTGTAGATTTTCAGGGTAAGTTTGTCGAATTAAAAAAAGTAGGAT
TACCTGAAATTTTATATTAA

Upstream 100 bases:

>100_bases
AGAACTCTACAATTAATTATTATAATAACTCAAAAGTTTTTAAAAACTTTTGTTGACAAAAATTTATATATGTAGTATTT
TTCAAAAAAAGATTAAAAAT

Downstream 100 bases:

>100_bases
AGTATGAGTTTATAGAAGTTATATTATTTCACGGAAGTCAAAATTTAGTATACTTTTAATTTAGATGTTGTCTAGCATTT
GTATTTTAAGTGTTAATTAT

Product: hypothetical protein

Products: NA

Alternate protein names: DGQHR Domain-Containing Protein

Number of amino acids: Translated: 539; Mature: 538

Protein sequence:

>539_residues
MSKKLMIKKANKPTSEIAKEILENDNREKEAIAILLDKHIGKDNRLLVQKTMMGNTEAYIGSVTLEWLDSRVRFASQLPL
FRQKFDIETDNIIRDSETIDEIQQRPLDWSRQAPLTLYLATRKSHKFPAVLVVISPSWVDNPKAEEWNKNGEANKSATDF
FSLDSQGKVGLLDLRLEVAVFALDGQHRLMGIQGLMELIKTGRLPRYNKQKKSVGAAITIDDLTITHQIELPEIQKLAYE
QIGIEFIPAVVKGETRAQARRRVRSVFAHVNLTAVKLSKGQLALLNEDDGFAIVARKIAIYHPILKEKDGRNPRINWDSA
TVAANSTVLTTLQALQEMSERYLKPRYPYWKPSDRGLIPMRPAEEELEEGVEEFMVLWNYLSNLPSYSRLENGSETSELR
RFSFERKPGEGHVLFRPIGQIAFAEALGILIYKKEFSLKEVFHKLNKYDVDGGLSGIEFPDSIWYGVLYDFNRKRMSVAG
RDLAMRLFIYILGGVSDKMERAEVRRQLAQARRVGEDQAVDFQGKFVELKKVGLPEILY

Sequences:

>Translated_539_residues
MSKKLMIKKANKPTSEIAKEILENDNREKEAIAILLDKHIGKDNRLLVQKTMMGNTEAYIGSVTLEWLDSRVRFASQLPL
FRQKFDIETDNIIRDSETIDEIQQRPLDWSRQAPLTLYLATRKSHKFPAVLVVISPSWVDNPKAEEWNKNGEANKSATDF
FSLDSQGKVGLLDLRLEVAVFALDGQHRLMGIQGLMELIKTGRLPRYNKQKKSVGAAITIDDLTITHQIELPEIQKLAYE
QIGIEFIPAVVKGETRAQARRRVRSVFAHVNLTAVKLSKGQLALLNEDDGFAIVARKIAIYHPILKEKDGRNPRINWDSA
TVAANSTVLTTLQALQEMSERYLKPRYPYWKPSDRGLIPMRPAEEELEEGVEEFMVLWNYLSNLPSYSRLENGSETSELR
RFSFERKPGEGHVLFRPIGQIAFAEALGILIYKKEFSLKEVFHKLNKYDVDGGLSGIEFPDSIWYGVLYDFNRKRMSVAG
RDLAMRLFIYILGGVSDKMERAEVRRQLAQARRVGEDQAVDFQGKFVELKKVGLPEILY
>Mature_538_residues
SKKLMIKKANKPTSEIAKEILENDNREKEAIAILLDKHIGKDNRLLVQKTMMGNTEAYIGSVTLEWLDSRVRFASQLPLF
RQKFDIETDNIIRDSETIDEIQQRPLDWSRQAPLTLYLATRKSHKFPAVLVVISPSWVDNPKAEEWNKNGEANKSATDFF
SLDSQGKVGLLDLRLEVAVFALDGQHRLMGIQGLMELIKTGRLPRYNKQKKSVGAAITIDDLTITHQIELPEIQKLAYEQ
IGIEFIPAVVKGETRAQARRRVRSVFAHVNLTAVKLSKGQLALLNEDDGFAIVARKIAIYHPILKEKDGRNPRINWDSAT
VAANSTVLTTLQALQEMSERYLKPRYPYWKPSDRGLIPMRPAEEELEEGVEEFMVLWNYLSNLPSYSRLENGSETSELRR
FSFERKPGEGHVLFRPIGQIAFAEALGILIYKKEFSLKEVFHKLNKYDVDGGLSGIEFPDSIWYGVLYDFNRKRMSVAGR
DLAMRLFIYILGGVSDKMERAEVRRQLAQARRVGEDQAVDFQGKFVELKKVGLPEILY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61570; Mature: 61439

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKLMIKKANKPTSEIAKEILENDNREKEAIAILLDKHIGKDNRLLVQKTMMGNTEAYI
CCCCEEEEECCCCHHHHHHHHHHCCCCCHHHHEEEEHHHCCCCCCEEEEHHHCCCCCHHH
GSVTLEWLDSRVRFASQLPLFRQKFDIETDNIIRDSETIDEIQQRPLDWSRQAPLTLYLA
HHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEECCHHHHHHHHHCCCCCCCCCCEEEEEE
TRKSHKFPAVLVVISPSWVDNPKAEEWNKNGEANKSATDFFSLDSQGKVGLLDLRLEVAV
ECCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEEEEEE
FALDGQHRLMGIQGLMELIKTGRLPRYNKQKKSVGAAITIDDLTITHQIELPEIQKLAYE
EEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCEEEEECEEEEEEECCCHHHHHHHH
QIGIEFIPAVVKGETRAQARRRVRSVFAHVNLTAVKLSKGQLALLNEDDGFAIVARKIAI
HHCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECCCCEEEHHHHHHH
YHPILKEKDGRNPRINWDSATVAANSTVLTTLQALQEMSERYLKPRYPYWKPSDRGLIPM
HHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
RPAEEELEEGVEEFMVLWNYLSNLPSYSRLENGSETSELRRFSFERKPGEGHVLFRPIGQ
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCEEEECHHH
IAFAEALGILIYKKEFSLKEVFHKLNKYDVDGGLSGIEFPDSIWYGVLYDFNRKRMSVAG
HHHHHHHHEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHEECCCHHHHHHH
RDLAMRLFIYILGGVSDKMERAEVRRQLAQARRVGEDQAVDFQGKFVELKKVGLPEILY
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCC
>Mature Secondary Structure 
SKKLMIKKANKPTSEIAKEILENDNREKEAIAILLDKHIGKDNRLLVQKTMMGNTEAYI
CCCEEEEECCCCHHHHHHHHHHCCCCCHHHHEEEEHHHCCCCCCEEEEHHHCCCCCHHH
GSVTLEWLDSRVRFASQLPLFRQKFDIETDNIIRDSETIDEIQQRPLDWSRQAPLTLYLA
HHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEECCHHHHHHHHHCCCCCCCCCCEEEEEE
TRKSHKFPAVLVVISPSWVDNPKAEEWNKNGEANKSATDFFSLDSQGKVGLLDLRLEVAV
ECCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEEEEEE
FALDGQHRLMGIQGLMELIKTGRLPRYNKQKKSVGAAITIDDLTITHQIELPEIQKLAYE
EEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCEEEEECEEEEEEECCCHHHHHHHH
QIGIEFIPAVVKGETRAQARRRVRSVFAHVNLTAVKLSKGQLALLNEDDGFAIVARKIAI
HHCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECCCCEEEHHHHHHH
YHPILKEKDGRNPRINWDSATVAANSTVLTTLQALQEMSERYLKPRYPYWKPSDRGLIPM
HHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
RPAEEELEEGVEEFMVLWNYLSNLPSYSRLENGSETSELRRFSFERKPGEGHVLFRPIGQ
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCEEEECHHH
IAFAEALGILIYKKEFSLKEVFHKLNKYDVDGGLSGIEFPDSIWYGVLYDFNRKRMSVAG
HHHHHHHHEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHEECCCHHHHHHH
RDLAMRLFIYILGGVSDKMERAEVRRQLAQARRVGEDQAVDFQGKFVELKKVGLPEILY
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA