| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475600
Identifier: 113475600
GI number: 113475600
Start: 2998586
End: 3000205
Strand: Direct
Name: 113475600
Synonym: Tery_1933
Alternate gene names: NA
Gene position: 2998586-3000205 (Clockwise)
Preceding gene: 113475595
Following gene: 113475601
Centisome position: 38.69
GC content: 34.32
Gene sequence:
>1620_bases ATGTCCAAAAAATTAATGATAAAAAAGGCCAATAAACCGACATCAGAAATAGCAAAAGAAATTTTAGAAAATGATAATCG AGAAAAAGAAGCGATCGCTATCCTATTAGACAAACATATAGGCAAAGACAATAGATTATTAGTACAAAAAACCATGATGG GAAACACAGAAGCTTACATTGGTTCGGTCACTCTAGAATGGTTAGATAGTCGTGTACGCTTTGCCTCTCAACTACCATTA TTTAGGCAAAAATTTGACATAGAAACTGATAATATAATTCGGGATTCAGAAACAATAGATGAAATTCAACAACGACCCTT AGACTGGTCTCGTCAAGCTCCATTAACTTTATATTTAGCAACTAGAAAATCCCATAAATTTCCGGCAGTATTAGTAGTAA TTAGTCCGAGTTGGGTAGATAATCCTAAGGCAGAAGAATGGAATAAAAATGGTGAAGCAAATAAATCTGCAACTGATTTT TTTTCCCTAGATTCACAGGGAAAAGTAGGATTATTAGACCTACGTTTAGAAGTAGCAGTATTTGCCTTAGATGGTCAACA TAGACTGATGGGAATTCAAGGATTAATGGAATTAATAAAAACTGGTAGATTACCAAGATATAACAAACAAAAGAAATCAG TAGGTGCAGCAATTACTATTGATGATTTAACTATAACTCATCAGATTGAATTACCAGAAATACAAAAATTAGCTTACGAA CAAATAGGAATAGAATTTATTCCAGCAGTAGTAAAAGGGGAGACAAGAGCACAAGCACGACGCAGAGTTAGGTCAGTTTT TGCTCATGTAAATTTGACAGCAGTAAAATTAAGTAAAGGGCAATTAGCATTATTAAATGAAGATGATGGATTTGCTATTG TAGCGAGAAAAATAGCAATTTATCATCCTATTTTAAAGGAGAAAGATGGTAGAAATCCAAGAATAAATTGGGATAGTGCA ACTGTGGCAGCTAACTCTACTGTTTTAACTACTCTCCAAGCATTGCAAGAAATGTCTGAAAGATATTTAAAACCTCGTTA TCCCTATTGGAAACCTTCAGATAGAGGTTTAATTCCTATGCGTCCTGCAGAAGAAGAGCTAGAAGAGGGGGTAGAAGAAT TTATGGTACTTTGGAATTATTTGTCTAATTTGCCTAGTTATTCTAGATTAGAAAATGGCTCTGAAACTTCGGAATTAAGA AGATTTAGTTTTGAGAGAAAACCGGGAGAAGGTCATGTTTTGTTCCGCCCTATTGGGCAAATTGCTTTTGCTGAAGCTTT AGGGATTTTAATATATAAAAAAGAATTTTCTCTCAAAGAAGTTTTTCATAAATTAAATAAGTATGATGTGGATGGTGGTT TGAGTGGAATAGAATTTCCTGACTCAATTTGGTATGGGGTTTTATATGATTTTAATCGGAAACGAATGTCGGTAGCTGGT AGAGATTTAGCAATGAGATTATTTATCTATATATTAGGTGGAGTTTCTGACAAAATGGAGCGGGCAGAAGTTCGTCGGCA GTTGGCGCAAGCAAGACGAGTTGGAGAGGATCAAGCTGTAGATTTTCAGGGTAAGTTTGTCGAATTAAAAAAAGTAGGAT TACCTGAAATTTTATATTAA
Upstream 100 bases:
>100_bases AGAACTCTACAATTAATTATTATAATAACTCAAAAGTTTTTAAAAACTTTTGTTGACAAAAATTTATATATGTAGTATTT TTCAAAAAAAGATTAAAAAT
Downstream 100 bases:
>100_bases AGTATGAGTTTATAGAAGTTATATTATTTCACGGAAGTCAAAATTTAGTATACTTTTAATTTAGATGTTGTCTAGCATTT GTATTTTAAGTGTTAATTAT
Product: hypothetical protein
Products: NA
Alternate protein names: DGQHR Domain-Containing Protein
Number of amino acids: Translated: 539; Mature: 538
Protein sequence:
>539_residues MSKKLMIKKANKPTSEIAKEILENDNREKEAIAILLDKHIGKDNRLLVQKTMMGNTEAYIGSVTLEWLDSRVRFASQLPL FRQKFDIETDNIIRDSETIDEIQQRPLDWSRQAPLTLYLATRKSHKFPAVLVVISPSWVDNPKAEEWNKNGEANKSATDF FSLDSQGKVGLLDLRLEVAVFALDGQHRLMGIQGLMELIKTGRLPRYNKQKKSVGAAITIDDLTITHQIELPEIQKLAYE QIGIEFIPAVVKGETRAQARRRVRSVFAHVNLTAVKLSKGQLALLNEDDGFAIVARKIAIYHPILKEKDGRNPRINWDSA TVAANSTVLTTLQALQEMSERYLKPRYPYWKPSDRGLIPMRPAEEELEEGVEEFMVLWNYLSNLPSYSRLENGSETSELR RFSFERKPGEGHVLFRPIGQIAFAEALGILIYKKEFSLKEVFHKLNKYDVDGGLSGIEFPDSIWYGVLYDFNRKRMSVAG RDLAMRLFIYILGGVSDKMERAEVRRQLAQARRVGEDQAVDFQGKFVELKKVGLPEILY
Sequences:
>Translated_539_residues MSKKLMIKKANKPTSEIAKEILENDNREKEAIAILLDKHIGKDNRLLVQKTMMGNTEAYIGSVTLEWLDSRVRFASQLPL FRQKFDIETDNIIRDSETIDEIQQRPLDWSRQAPLTLYLATRKSHKFPAVLVVISPSWVDNPKAEEWNKNGEANKSATDF FSLDSQGKVGLLDLRLEVAVFALDGQHRLMGIQGLMELIKTGRLPRYNKQKKSVGAAITIDDLTITHQIELPEIQKLAYE QIGIEFIPAVVKGETRAQARRRVRSVFAHVNLTAVKLSKGQLALLNEDDGFAIVARKIAIYHPILKEKDGRNPRINWDSA TVAANSTVLTTLQALQEMSERYLKPRYPYWKPSDRGLIPMRPAEEELEEGVEEFMVLWNYLSNLPSYSRLENGSETSELR RFSFERKPGEGHVLFRPIGQIAFAEALGILIYKKEFSLKEVFHKLNKYDVDGGLSGIEFPDSIWYGVLYDFNRKRMSVAG RDLAMRLFIYILGGVSDKMERAEVRRQLAQARRVGEDQAVDFQGKFVELKKVGLPEILY >Mature_538_residues SKKLMIKKANKPTSEIAKEILENDNREKEAIAILLDKHIGKDNRLLVQKTMMGNTEAYIGSVTLEWLDSRVRFASQLPLF RQKFDIETDNIIRDSETIDEIQQRPLDWSRQAPLTLYLATRKSHKFPAVLVVISPSWVDNPKAEEWNKNGEANKSATDFF SLDSQGKVGLLDLRLEVAVFALDGQHRLMGIQGLMELIKTGRLPRYNKQKKSVGAAITIDDLTITHQIELPEIQKLAYEQ IGIEFIPAVVKGETRAQARRRVRSVFAHVNLTAVKLSKGQLALLNEDDGFAIVARKIAIYHPILKEKDGRNPRINWDSAT VAANSTVLTTLQALQEMSERYLKPRYPYWKPSDRGLIPMRPAEEELEEGVEEFMVLWNYLSNLPSYSRLENGSETSELRR FSFERKPGEGHVLFRPIGQIAFAEALGILIYKKEFSLKEVFHKLNKYDVDGGLSGIEFPDSIWYGVLYDFNRKRMSVAGR DLAMRLFIYILGGVSDKMERAEVRRQLAQARRVGEDQAVDFQGKFVELKKVGLPEILY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61570; Mature: 61439
Theoretical pI: Translated: 9.49; Mature: 9.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKLMIKKANKPTSEIAKEILENDNREKEAIAILLDKHIGKDNRLLVQKTMMGNTEAYI CCCCEEEEECCCCHHHHHHHHHHCCCCCHHHHEEEEHHHCCCCCCEEEEHHHCCCCCHHH GSVTLEWLDSRVRFASQLPLFRQKFDIETDNIIRDSETIDEIQQRPLDWSRQAPLTLYLA HHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEECCHHHHHHHHHCCCCCCCCCCEEEEEE TRKSHKFPAVLVVISPSWVDNPKAEEWNKNGEANKSATDFFSLDSQGKVGLLDLRLEVAV ECCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEEEEEE FALDGQHRLMGIQGLMELIKTGRLPRYNKQKKSVGAAITIDDLTITHQIELPEIQKLAYE EEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCEEEEECEEEEEEECCCHHHHHHHH QIGIEFIPAVVKGETRAQARRRVRSVFAHVNLTAVKLSKGQLALLNEDDGFAIVARKIAI HHCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECCCCEEEHHHHHHH YHPILKEKDGRNPRINWDSATVAANSTVLTTLQALQEMSERYLKPRYPYWKPSDRGLIPM HHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC RPAEEELEEGVEEFMVLWNYLSNLPSYSRLENGSETSELRRFSFERKPGEGHVLFRPIGQ CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCEEEECHHH IAFAEALGILIYKKEFSLKEVFHKLNKYDVDGGLSGIEFPDSIWYGVLYDFNRKRMSVAG HHHHHHHHEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHEECCCHHHHHHH RDLAMRLFIYILGGVSDKMERAEVRRQLAQARRVGEDQAVDFQGKFVELKKVGLPEILY HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCC >Mature Secondary Structure SKKLMIKKANKPTSEIAKEILENDNREKEAIAILLDKHIGKDNRLLVQKTMMGNTEAYI CCCEEEEECCCCHHHHHHHHHHCCCCCHHHHEEEEHHHCCCCCCEEEEHHHCCCCCHHH GSVTLEWLDSRVRFASQLPLFRQKFDIETDNIIRDSETIDEIQQRPLDWSRQAPLTLYLA HHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEECCHHHHHHHHHCCCCCCCCCCEEEEEE TRKSHKFPAVLVVISPSWVDNPKAEEWNKNGEANKSATDFFSLDSQGKVGLLDLRLEVAV ECCCCCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEEEEEE FALDGQHRLMGIQGLMELIKTGRLPRYNKQKKSVGAAITIDDLTITHQIELPEIQKLAYE EEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCEEEEECEEEEEEECCCHHHHHHHH QIGIEFIPAVVKGETRAQARRRVRSVFAHVNLTAVKLSKGQLALLNEDDGFAIVARKIAI HHCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECCCCEEEHHHHHHH YHPILKEKDGRNPRINWDSATVAANSTVLTTLQALQEMSERYLKPRYPYWKPSDRGLIPM HHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC RPAEEELEEGVEEFMVLWNYLSNLPSYSRLENGSETSELRRFSFERKPGEGHVLFRPIGQ CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCEEEECHHH IAFAEALGILIYKKEFSLKEVFHKLNKYDVDGGLSGIEFPDSIWYGVLYDFNRKRMSVAG HHHHHHHHEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHEECCCHHHHHHH RDLAMRLFIYILGGVSDKMERAEVRRQLAQARRVGEDQAVDFQGKFVELKKVGLPEILY HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA