| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113475601
Identifier: 113475601
GI number: 113475601
Start: 3000891
End: 3001781
Strand: Direct
Name: 113475601
Synonym: Tery_1934
Alternate gene names: NA
Gene position: 3000891-3001781 (Clockwise)
Preceding gene: 113475600
Following gene: 113475602
Centisome position: 38.72
GC content: 39.06
Gene sequence:
>891_bases ATGGATAGTATTTTTATTCAAATAGTTGCTTACCGGGATTTAGAATTAGTTCCCACAGTTGAAGAGGCGATCGCTCATGC TACTCATCCCAAGCGTCTCACTTTTGGTATTTGTTGGCAGTATGGTACGGATGAGGAAAAAGATTATATTAGTAAACTTA AAGCTATAAAAAATTGTCGTATTATTACAGTTACAGCTTCTCAAGCTCGCGGTGTAGGTTGGGCGAGGTCTCTGGTGCAA AAGTTATGGCAAAAAGAACAATATACTCTACAAATTGATGCCCATATGAGATTTTTACCTGGATGGGATGTGAAATTAAT TAAAATGCTGAAAGCCTGTCCTAGTGAAAAACCGCTTTTAAGTGCTTATCCTCCTGCTTACAGACCCCCTAGAGAATTGC TTGGAGATACACCGAGTCGCTTAGAGCCAAGCCAGTTTGGAGATCCTGGTACTTTAACTTTAAAAGCAATAGGAGATTTG AGTAAATGCAGTACTCCGCAACTAGGAGCTTTTGTTGCTGCTGGATTTATTTTTGCAGAAGGGTCAATTATTGAAGAGGT GCCCTACGACCCGGATATTTATTTTACTGGAGAAGAGGTGTTATTTGCTGCTAAAGCTTGGACGAAGGGGTGGGATATTT ATCATCCTAATTTGAGTGTTTGTTGGCATTTTTATAATACTGGTAAAAAGCGGGTTGTGCATTGGGAAGATCATCAACAT TGGTGGGTCCAAAATAAGGTATCTGAATCTCGTTTTCGTCAGATTTTGGGAATGGAAACTGCAAAGGAGGATTTTGGAAT TTATGGATTAGGAAATGTCAGAAGTTTGGCAGAGTATGAAGCATTTGCCGGTGTAAATTTTCAGGAACGTTGGTTTATTC ATTTTATTTAG
Upstream 100 bases:
>100_bases CGATTTAGATAAACTTAATAGTATGGTCAATTGTAAGACTACGGATGTTTATTAAAATAGGTAATTTGAGAGCTAGATTA AATAACTCAAGACATATTTT
Downstream 100 bases:
>100_bases GGAAGTTAGAAGTTAAAAGTTAGAAGGAGGTTAATTAACTACAAGTGTGATAATTTTTTCTTATTAACTTTTTTACATTA GGTTTCTTCATAAAAGGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 296; Mature: 296
Protein sequence:
>296_residues MDSIFIQIVAYRDLELVPTVEEAIAHATHPKRLTFGICWQYGTDEEKDYISKLKAIKNCRIITVTASQARGVGWARSLVQ KLWQKEQYTLQIDAHMRFLPGWDVKLIKMLKACPSEKPLLSAYPPAYRPPRELLGDTPSRLEPSQFGDPGTLTLKAIGDL SKCSTPQLGAFVAAGFIFAEGSIIEEVPYDPDIYFTGEEVLFAAKAWTKGWDIYHPNLSVCWHFYNTGKKRVVHWEDHQH WWVQNKVSESRFRQILGMETAKEDFGIYGLGNVRSLAEYEAFAGVNFQERWFIHFI
Sequences:
>Translated_296_residues MDSIFIQIVAYRDLELVPTVEEAIAHATHPKRLTFGICWQYGTDEEKDYISKLKAIKNCRIITVTASQARGVGWARSLVQ KLWQKEQYTLQIDAHMRFLPGWDVKLIKMLKACPSEKPLLSAYPPAYRPPRELLGDTPSRLEPSQFGDPGTLTLKAIGDL SKCSTPQLGAFVAAGFIFAEGSIIEEVPYDPDIYFTGEEVLFAAKAWTKGWDIYHPNLSVCWHFYNTGKKRVVHWEDHQH WWVQNKVSESRFRQILGMETAKEDFGIYGLGNVRSLAEYEAFAGVNFQERWFIHFI >Mature_296_residues MDSIFIQIVAYRDLELVPTVEEAIAHATHPKRLTFGICWQYGTDEEKDYISKLKAIKNCRIITVTASQARGVGWARSLVQ KLWQKEQYTLQIDAHMRFLPGWDVKLIKMLKACPSEKPLLSAYPPAYRPPRELLGDTPSRLEPSQFGDPGTLTLKAIGDL SKCSTPQLGAFVAAGFIFAEGSIIEEVPYDPDIYFTGEEVLFAAKAWTKGWDIYHPNLSVCWHFYNTGKKRVVHWEDHQH WWVQNKVSESRFRQILGMETAKEDFGIYGLGNVRSLAEYEAFAGVNFQERWFIHFI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33950; Mature: 33950
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSIFIQIVAYRDLELVPTVEEAIAHATHPKRLTFGICWQYGTDEEKDYISKLKAIKNCR CCCEEEEEEEECCCEECCCHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCE IITVTASQARGVGWARSLVQKLWQKEQYTLQIDAHMRFLPGWDVKLIKMLKACPSEKPLL EEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECEEEECCCCCHHHHHHHHHCCCCCCCC SAYPPAYRPPRELLGDTPSRLEPSQFGDPGTLTLKAIGDLSKCSTPQLGAFVAAGFIFAE CCCCCCCCCHHHHHCCCCCCCCCHHCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHEEC GSIIEEVPYDPDIYFTGEEVLFAAKAWTKGWDIYHPNLSVCWHFYNTGKKRVVHWEDHQH CCCCCCCCCCCCEEECCHHEEEEEHHHCCCCEEECCCCEEEEEEECCCCEEEEEEECCCE WWVQNKVSESRFRQILGMETAKEDFGIYGLGNVRSLAEYEAFAGVNFQERWFIHFI EEEHHHHHHHHHHHHHCCCHHHHCCCEEECCCHHHHHHHHHHCCCCCCCEEEEEEC >Mature Secondary Structure MDSIFIQIVAYRDLELVPTVEEAIAHATHPKRLTFGICWQYGTDEEKDYISKLKAIKNCR CCCEEEEEEEECCCEECCCHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCE IITVTASQARGVGWARSLVQKLWQKEQYTLQIDAHMRFLPGWDVKLIKMLKACPSEKPLL EEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECEEEECCCCCHHHHHHHHHCCCCCCCC SAYPPAYRPPRELLGDTPSRLEPSQFGDPGTLTLKAIGDLSKCSTPQLGAFVAAGFIFAE CCCCCCCCCHHHHHCCCCCCCCCHHCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHEEC GSIIEEVPYDPDIYFTGEEVLFAAKAWTKGWDIYHPNLSVCWHFYNTGKKRVVHWEDHQH CCCCCCCCCCCCEEECCHHEEEEEHHHCCCCEEECCCCEEEEEEECCCCEEEEEEECCCE WWVQNKVSESRFRQILGMETAKEDFGIYGLGNVRSLAEYEAFAGVNFQERWFIHFI EEEHHHHHHHHHHHHHCCCHHHHCCCEEECCCHHHHHHHHHHCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA