Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475456

Identifier: 113475456

GI number: 113475456

Start: 2726086

End: 2727363

Strand: Direct

Name: 113475456

Synonym: Tery_1785

Alternate gene names: NA

Gene position: 2726086-2727363 (Clockwise)

Preceding gene: 113475455

Following gene: 113475457

Centisome position: 35.17

GC content: 31.92

Gene sequence:

>1278_bases
ATGCCACGCAATCAATTTTATCCCGATAAATCTGTTCCTCCAGAAAAATTTGTAGGTAGAACATCTGAACTATCCACGAT
TTTTGACAAAATTAATAGTCGCGATCATGTTGCTATTTTTGGTAGTTCTGGTATGGGTAAAACATCTTTGCTTCAATATA
TAGAAAACTCTAAATTTTGGGAAGAAAGAGACTTAGATTTTTCAGAAGCTTTGATTGTTTATCACAACTGCGAGCTTTCA
GTTATAGATAGTTTTTGGCAAGAAGTCCTCAGAACATTAATAGATAAAGCTACAGGTGATCAAGATTTAGTGAGTAAGAT
TAATGCTTTATTAGGGTTGGAGAAAATAGAAATAACAGATATACGGGAGCTTCTCAGAGAGATTGGGAAAAGAGGTAAGT
TTTTATTATTATTATTAGATGACTATCATAGAATACTTGGTACACGAGAAGAGTATCCGGAAAACCAGGGAAAAAAATCT
AAAAAAGTGCTGACTTTTTTAAGTGAGTTGCGTAACCTAGCAGTTCATAATAGAGAAGGTCAATATTTCTCAACTATTGT
TGCTACGTTTCAAAAGTTGCATGAACTAGGTCCAACAATTGTTCCTGGTGGTTCTCCTTGGTATAATCATTATGCCTATC
TACCTTTAAAACCTTTTTGTAAAAGCGATATTGAGGGTCATTTTTTTAATCGCGATAGTCATTTTTTCATTTCAGATGCT
CCGAAAGAAGAAGTTTTAAAAATGACTGGTGGGTATCCAGCGTTACTTCAGTTTACAGGTTATATATTTTCTCGCTTGGA
ACCAGTTAATGTTGATACTCTGAATACAATGTTAAAAAACGATGCTGATAGAATTTTTCAGGATGTCTGGAACAATTTTG
AAAAAAATGAGCAAGAAATTTTGCAGTTAATTTTAATTGATAAATATAAGGGTAAATTCAGGGAAATTTCTTATTCTATT
GCTGGCATAGAAAAAGAGTTTATTCGCAATATTAGCATATTGAAGAGTCTTGAAGAAAAAGGATTTATCAGTCAGGTTAA
ACAAGCAAATAAATATAGTTTTACTTCTTCTTTAATGGAAGATTTTATTGGTGATCAACTTGCAGAAAAAAATGTTTCAA
ACGCTAAAGACCGCAAGATAGTGATTAATTTATTTATTATCAAGATTACTCTTGGACTATGGAAGAAAGTTAAAGAAAAA
ATACAGCCTGTTACTAAGTTCATATCACCTCTTGCTAAAATCATCGATTTAATCGCTAACAAAATAGAAGGCAAATAA

Upstream 100 bases:

>100_bases
GTATGAAATATCTGAAAGATGCCGAAGATTTAGCAATTCTGAAGACTCTGATATAATATGAAATTATAGTCAAGCTAAAA
GTAAAATAGTTGATCCAATT

Downstream 100 bases:

>100_bases
TAGCAAACGTCTAGTTGGATGTAGTTTTGCAAATGAGAAATTTAAAGGCTTTGATTAAAAATCCCTACACTGTTGGTCGC
CCAATTTTTGAACCAGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 424

Protein sequence:

>425_residues
MPRNQFYPDKSVPPEKFVGRTSELSTIFDKINSRDHVAIFGSSGMGKTSLLQYIENSKFWEERDLDFSEALIVYHNCELS
VIDSFWQEVLRTLIDKATGDQDLVSKINALLGLEKIEITDIRELLREIGKRGKFLLLLLDDYHRILGTREEYPENQGKKS
KKVLTFLSELRNLAVHNREGQYFSTIVATFQKLHELGPTIVPGGSPWYNHYAYLPLKPFCKSDIEGHFFNRDSHFFISDA
PKEEVLKMTGGYPALLQFTGYIFSRLEPVNVDTLNTMLKNDADRIFQDVWNNFEKNEQEILQLILIDKYKGKFREISYSI
AGIEKEFIRNISILKSLEEKGFISQVKQANKYSFTSSLMEDFIGDQLAEKNVSNAKDRKIVINLFIIKITLGLWKKVKEK
IQPVTKFISPLAKIIDLIANKIEGK

Sequences:

>Translated_425_residues
MPRNQFYPDKSVPPEKFVGRTSELSTIFDKINSRDHVAIFGSSGMGKTSLLQYIENSKFWEERDLDFSEALIVYHNCELS
VIDSFWQEVLRTLIDKATGDQDLVSKINALLGLEKIEITDIRELLREIGKRGKFLLLLLDDYHRILGTREEYPENQGKKS
KKVLTFLSELRNLAVHNREGQYFSTIVATFQKLHELGPTIVPGGSPWYNHYAYLPLKPFCKSDIEGHFFNRDSHFFISDA
PKEEVLKMTGGYPALLQFTGYIFSRLEPVNVDTLNTMLKNDADRIFQDVWNNFEKNEQEILQLILIDKYKGKFREISYSI
AGIEKEFIRNISILKSLEEKGFISQVKQANKYSFTSSLMEDFIGDQLAEKNVSNAKDRKIVINLFIIKITLGLWKKVKEK
IQPVTKFISPLAKIIDLIANKIEGK
>Mature_424_residues
PRNQFYPDKSVPPEKFVGRTSELSTIFDKINSRDHVAIFGSSGMGKTSLLQYIENSKFWEERDLDFSEALIVYHNCELSV
IDSFWQEVLRTLIDKATGDQDLVSKINALLGLEKIEITDIRELLREIGKRGKFLLLLLDDYHRILGTREEYPENQGKKSK
KVLTFLSELRNLAVHNREGQYFSTIVATFQKLHELGPTIVPGGSPWYNHYAYLPLKPFCKSDIEGHFFNRDSHFFISDAP
KEEVLKMTGGYPALLQFTGYIFSRLEPVNVDTLNTMLKNDADRIFQDVWNNFEKNEQEILQLILIDKYKGKFREISYSIA
GIEKEFIRNISILKSLEEKGFISQVKQANKYSFTSSLMEDFIGDQLAEKNVSNAKDRKIVINLFIIKITLGLWKKVKEKI
QPVTKFISPLAKIIDLIANKIEGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49041; Mature: 48910

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRNQFYPDKSVPPEKFVGRTSELSTIFDKINSRDHVAIFGSSGMGKTSLLQYIENSKFW
CCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCC
EERDLDFSEALIVYHNCELSVIDSFWQEVLRTLIDKATGDQDLVSKINALLGLEKIEITD
HHCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHH
IRELLREIGKRGKFLLLLLDDYHRILGTREEYPENQGKKSKKVLTFLSELRNLAVHNREG
HHHHHHHHCCCCCEEEEEHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
QYFSTIVATFQKLHELGPTIVPGGSPWYNHYAYLPLKPFCKSDIEGHFFNRDSHFFISDA
HHHHHHHHHHHHHHHCCCEECCCCCCHHCCEEECCCCHHHHCCCCCCEECCCCCEEECCC
PKEEVLKMTGGYPALLQFTGYIFSRLEPVNVDTLNTMLKNDADRIFQDVWNNFEKNEQEI
CHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHH
LQLILIDKYKGKFREISYSIAGIEKEFIRNISILKSLEEKGFISQVKQANKYSFTSSLME
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFIGDQLAEKNVSNAKDRKIVINLFIIKITLGLWKKVKEKIQPVTKFISPLAKIIDLIAN
HHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIEGK
HHCCC
>Mature Secondary Structure 
PRNQFYPDKSVPPEKFVGRTSELSTIFDKINSRDHVAIFGSSGMGKTSLLQYIENSKFW
CCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCC
EERDLDFSEALIVYHNCELSVIDSFWQEVLRTLIDKATGDQDLVSKINALLGLEKIEITD
HHCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHH
IRELLREIGKRGKFLLLLLDDYHRILGTREEYPENQGKKSKKVLTFLSELRNLAVHNREG
HHHHHHHHCCCCCEEEEEHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
QYFSTIVATFQKLHELGPTIVPGGSPWYNHYAYLPLKPFCKSDIEGHFFNRDSHFFISDA
HHHHHHHHHHHHHHHCCCEECCCCCCHHCCEEECCCCHHHHCCCCCCEECCCCCEEECCC
PKEEVLKMTGGYPALLQFTGYIFSRLEPVNVDTLNTMLKNDADRIFQDVWNNFEKNEQEI
CHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHH
LQLILIDKYKGKFREISYSIAGIEKEFIRNISILKSLEEKGFISQVKQANKYSFTSSLME
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFIGDQLAEKNVSNAKDRKIVINLFIIKITLGLWKKVKEKIQPVTKFISPLAKIIDLIAN
HHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIEGK
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA