Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475455

Identifier: 113475455

GI number: 113475455

Start: 2724804

End: 2725916

Strand: Direct

Name: 113475455

Synonym: Tery_1784

Alternate gene names: NA

Gene position: 2724804-2725916 (Clockwise)

Preceding gene: 113475454

Following gene: 113475456

Centisome position: 35.16

GC content: 31.18

Gene sequence:

>1113_bases
ATGAACGATTACAAATACAGACCAAATCCTTATATTTTTGGCAAACCAATTTATCAAAAAAAACAATTATTTGGTAGAGA
AAATACTGTTAAAAGAATTCAAAATAACATTAAAAATAATATAAAAATAACTTTGTTGCATATCCAAAGACGTATTGGTA
AAACTTCATTAATAACTTGTTTGCCTCAGTTTTTCACTGATGATATTAAGTGTGTTACTTTTTCATTTCAAGGTTATAAA
AATAGATCAATACTTGAAATCTTAAATAATCTTGCTGATGAGATTGCTAATACTATTGATGGAGTCCCTAGAGAAGTAAG
AGAACTAGCTGATAGTTCAGAAAATTTTTTTCGGATTTTTTTGCCAAGGATTATTAATAAATACTTATCTGGTAAAAACC
TTGTTCTTCTCCTAGATGAATTTGATGTTTTAGAAGAAGATCAAACAACGTTTATTCATGGAAAATACTTATTTAATGAA
TTAAAAAAAGCTGTGAACCGAGAAGAAAAACTATTTGCTATCCTGGTTTTTGGTAGACCATTAAAAGATATGACCTATCT
AGGAGAATTGTTACAAAAAGAAGGTCAAGAGACTATAGAAGTTGGTTTGCTGGATAAGAAAAGTACACACAATTTGATTG
TTGAGCCAGCTAAGGGAACATTAGAATATGAAGCAGATGCAATTGATGCTATTTGGCAACTATCCGCGGGTCATCCTTCT
CTAACACAACTACTATGCTTGTATATTTTTAGGTTTTGTATTCAAAAAGGAATAAAAAAGGTAACTCATACTCATGTCGA
CTCAATTTTAGATGAAGCAATGGAGGGAGGTAAGGCAGCATTAAAAGGCTTTATAGAACCTTTGAATGAAAACGAAAATT
TGTTTTTTCGTGCAGTAGCAAAAGCTCAGAATGAAGTTGGAGAAAACCGACTAAAGGCTAATATAAAAAAATCGCAGTCT
GTAGGGAAACGTTTAGCTGAAGAATATGGCTTTTTAGAAGAAAAAGAAGATGGAACAGGCTATAAAATTAAAGTCGAGTT
AGTCCGGCGTTGGCTAGTAAAAAATTATCCTTTATCTGACAAAGAAAAGCTGCAAGTGGAAAAAGCTATTTAA

Upstream 100 bases:

>100_bases
AGAATCACTGGTTTGTCTTAAGGAAATATTATCCTTATTTTTTGTGGCATGATCAAGAGTTACGATTTAGTATATTAAAT
ATTTTTAACTTTCAAGAAAG

Downstream 100 bases:

>100_bases
AAAAATAAAATCCCATATTTTGTGTTTTGGATGTGGAACTGCTATTAAAACCTAGCCAACTTAATTAAAGTATGAAATAT
CTGAAAGATGCCGAAGATTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MNDYKYRPNPYIFGKPIYQKKQLFGRENTVKRIQNNIKNNIKITLLHIQRRIGKTSLITCLPQFFTDDIKCVTFSFQGYK
NRSILEILNNLADEIANTIDGVPREVRELADSSENFFRIFLPRIINKYLSGKNLVLLLDEFDVLEEDQTTFIHGKYLFNE
LKKAVNREEKLFAILVFGRPLKDMTYLGELLQKEGQETIEVGLLDKKSTHNLIVEPAKGTLEYEADAIDAIWQLSAGHPS
LTQLLCLYIFRFCIQKGIKKVTHTHVDSILDEAMEGGKAALKGFIEPLNENENLFFRAVAKAQNEVGENRLKANIKKSQS
VGKRLAEEYGFLEEKEDGTGYKIKVELVRRWLVKNYPLSDKEKLQVEKAI

Sequences:

>Translated_370_residues
MNDYKYRPNPYIFGKPIYQKKQLFGRENTVKRIQNNIKNNIKITLLHIQRRIGKTSLITCLPQFFTDDIKCVTFSFQGYK
NRSILEILNNLADEIANTIDGVPREVRELADSSENFFRIFLPRIINKYLSGKNLVLLLDEFDVLEEDQTTFIHGKYLFNE
LKKAVNREEKLFAILVFGRPLKDMTYLGELLQKEGQETIEVGLLDKKSTHNLIVEPAKGTLEYEADAIDAIWQLSAGHPS
LTQLLCLYIFRFCIQKGIKKVTHTHVDSILDEAMEGGKAALKGFIEPLNENENLFFRAVAKAQNEVGENRLKANIKKSQS
VGKRLAEEYGFLEEKEDGTGYKIKVELVRRWLVKNYPLSDKEKLQVEKAI
>Mature_370_residues
MNDYKYRPNPYIFGKPIYQKKQLFGRENTVKRIQNNIKNNIKITLLHIQRRIGKTSLITCLPQFFTDDIKCVTFSFQGYK
NRSILEILNNLADEIANTIDGVPREVRELADSSENFFRIFLPRIINKYLSGKNLVLLLDEFDVLEEDQTTFIHGKYLFNE
LKKAVNREEKLFAILVFGRPLKDMTYLGELLQKEGQETIEVGLLDKKSTHNLIVEPAKGTLEYEADAIDAIWQLSAGHPS
LTQLLCLYIFRFCIQKGIKKVTHTHVDSILDEAMEGGKAALKGFIEPLNENENLFFRAVAKAQNEVGENRLKANIKKSQS
VGKRLAEEYGFLEEKEDGTGYKIKVELVRRWLVKNYPLSDKEKLQVEKAI

Specific function: Unknown

COG id: COG1672

COG function: function code R; Predicted ATPase (AAA+ superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42669; Mature: 42669

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDYKYRPNPYIFGKPIYQKKQLFGRENTVKRIQNNIKNNIKITLLHIQRRIGKTSLITC
CCCCCCCCCCEEECCCHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEHHHHHHCHHHHHHH
LPQFFTDDIKCVTFSFQGYKNRSILEILNNLADEIANTIDGVPREVRELADSSENFFRIF
HHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH
LPRIINKYLSGKNLVLLLDEFDVLEEDQTTFIHGKYLFNELKKAVNREEKLFAILVFGRP
HHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHCCHHHEEEEEEECCC
LKDMTYLGELLQKEGQETIEVGLLDKKSTHNLIVEPAKGTLEYEADAIDAIWQLSAGHPS
HHHHHHHHHHHHHCCCHHEEEECCCCCCCCCEEEECCCCCEEECHHHHHHHHHCCCCCCH
LTQLLCLYIFRFCIQKGIKKVTHTHVDSILDEAMEGGKAALKGFIEPLNENENLFFRAVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHH
KAQNEVGENRLKANIKKSQSVGKRLAEEYGFLEEKEDGTGYKIKVELVRRWLVKNYPLSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCC
KEKLQVEKAI
HHHHHHHCCC
>Mature Secondary Structure
MNDYKYRPNPYIFGKPIYQKKQLFGRENTVKRIQNNIKNNIKITLLHIQRRIGKTSLITC
CCCCCCCCCCEEECCCHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEHHHHHHCHHHHHHH
LPQFFTDDIKCVTFSFQGYKNRSILEILNNLADEIANTIDGVPREVRELADSSENFFRIF
HHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH
LPRIINKYLSGKNLVLLLDEFDVLEEDQTTFIHGKYLFNELKKAVNREEKLFAILVFGRP
HHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHCCHHHEEEEEEECCC
LKDMTYLGELLQKEGQETIEVGLLDKKSTHNLIVEPAKGTLEYEADAIDAIWQLSAGHPS
HHHHHHHHHHHHHCCCHHEEEECCCCCCCCCEEEECCCCCEEECHHHHHHHHHCCCCCCH
LTQLLCLYIFRFCIQKGIKKVTHTHVDSILDEAMEGGKAALKGFIEPLNENENLFFRAVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHH
KAQNEVGENRLKANIKKSQSVGKRLAEEYGFLEEKEDGTGYKIKVELVRRWLVKNYPLSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCC
KEKLQVEKAI
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA