| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475391
Identifier: 113475391
GI number: 113475391
Start: 2608439
End: 2609413
Strand: Direct
Name: 113475391
Synonym: Tery_1715
Alternate gene names: NA
Gene position: 2608439-2609413 (Clockwise)
Preceding gene: 113475390
Following gene: 113475399
Centisome position: 33.66
GC content: 32.51
Gene sequence:
>975_bases ATGAGCCATAAACGGATTTTTATCACGGGCGCTAGTGGATGTATTGGTCACTATATTGTTGAATCTTTAATTCAAAATAC CCACCACGAACTTTACTTATTAGTTAGGAACCCAGATAAATTAAAAGTTGATTATAAAGCTCGTCCAGGTGTTAATCTTT TAAAAGCAAATCTGAGAGAAATTGAGCAATTTTCATCTTTACTTCCAGAAATTAATGTAGCAATTTTAGCTGCCACTGCT TGGGGAAATTTGCAGGAAGTATTTGATATTAATGTGATTAAAACTCTGAAGTTAATCACATTACTCAATCCTGAAGTATG TGAAAATATAATCTATTTTTCAACTGCCAGTATTCTTGACCAAAATAATAGATTGCTCACAAAAGCTGGAGAGATAGGTA CTGACTATATTCGTTCTAAGTATGACTGTATGTATCAGTTATCCCAACTGGATAATTTACCTCCTCTAACCTGTCTTTTT CCTACATTGGTTTTAGGAGGAGATCAGGAAAAACCTTATTCTCATCTCTCTGCTGGTTTACCAGAAATAATTAAACATAT TGGTTTAATTCGATGGTTAAAAGTTGATGGTAGTTTCCATTTTATTCACGCTGCTGATATTGCTCAAGTAGTTAGTTATT TAGTCGAACATCCACCACATTCAAAAGAATTACAAAAGTTAATTTTAGGTAATCCAAAAGTTACAGTAAATCAGGTTGTT GAAGAAATTTGTGCATATCTGAAGAAACGAATATTTTTTCGTTTTAATTTAGCTCCTTGGTTGATCGAGGTAATAATTTC GGTATTTAAAATTCAAGTAGCAGCTTGGGATAGGTTCTGTTTAGAATATCGCCATTTTACATATCAAAATCCTATTAACC CTGCTAGTTTTAAACTGCCGAGTTATTGTCCTGCTATCCCTGATATTTTGAGAACTAGAAATTTGAAATTCTCACCCTTA AATCAAAAATTATAA
Upstream 100 bases:
>100_bases AATTTATTAGTAAGCATTCAACCGAATGCTTACCATAACAGAGAATTAGATTTTAGTAAGAACTAACAACTAATAACTGA TAACTGATTAACTGATTTGT
Downstream 100 bases:
>100_bases TGGGAGTAATGGGTGGAATTTATGATAGTTGAAGTCAGCTCTCTCCTTACTCTGCTTATGACTAGAGATTTACAGTGCAA GAATAACAACAGCAGTAATA
Product: NAD-dependent epimerase/dehydratase
Products: NA
Alternate protein names: Nucleoside-Diphosphate-Sugar Epimerase; NAD-Dependent Epimerase/Dehydratase Family Protein; NAD Dependent Epimerase/Dehydratase; NmrA Family Protein; NAD Dependent Epimerase/Dehydratase Family; Nucleoside-Diphosphate-Sugar Epimerases
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MSHKRIFITGASGCIGHYIVESLIQNTHHELYLLVRNPDKLKVDYKARPGVNLLKANLREIEQFSSLLPEINVAILAATA WGNLQEVFDINVIKTLKLITLLNPEVCENIIYFSTASILDQNNRLLTKAGEIGTDYIRSKYDCMYQLSQLDNLPPLTCLF PTLVLGGDQEKPYSHLSAGLPEIIKHIGLIRWLKVDGSFHFIHAADIAQVVSYLVEHPPHSKELQKLILGNPKVTVNQVV EEICAYLKKRIFFRFNLAPWLIEVIISVFKIQVAAWDRFCLEYRHFTYQNPINPASFKLPSYCPAIPDILRTRNLKFSPL NQKL
Sequences:
>Translated_324_residues MSHKRIFITGASGCIGHYIVESLIQNTHHELYLLVRNPDKLKVDYKARPGVNLLKANLREIEQFSSLLPEINVAILAATA WGNLQEVFDINVIKTLKLITLLNPEVCENIIYFSTASILDQNNRLLTKAGEIGTDYIRSKYDCMYQLSQLDNLPPLTCLF PTLVLGGDQEKPYSHLSAGLPEIIKHIGLIRWLKVDGSFHFIHAADIAQVVSYLVEHPPHSKELQKLILGNPKVTVNQVV EEICAYLKKRIFFRFNLAPWLIEVIISVFKIQVAAWDRFCLEYRHFTYQNPINPASFKLPSYCPAIPDILRTRNLKFSPL NQKL >Mature_323_residues SHKRIFITGASGCIGHYIVESLIQNTHHELYLLVRNPDKLKVDYKARPGVNLLKANLREIEQFSSLLPEINVAILAATAW GNLQEVFDINVIKTLKLITLLNPEVCENIIYFSTASILDQNNRLLTKAGEIGTDYIRSKYDCMYQLSQLDNLPPLTCLFP TLVLGGDQEKPYSHLSAGLPEIIKHIGLIRWLKVDGSFHFIHAADIAQVVSYLVEHPPHSKELQKLILGNPKVTVNQVVE EICAYLKKRIFFRFNLAPWLIEVIISVFKIQVAAWDRFCLEYRHFTYQNPINPASFKLPSYCPAIPDILRTRNLKFSPLN QKL
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37006; Mature: 36875
Theoretical pI: Translated: 8.63; Mature: 8.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHKRIFITGASGCIGHYIVESLIQNTHHELYLLVRNPDKLKVDYKARPGVNLLKANLRE CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHH IEQFSSLLPEINVAILAATAWGNLQEVFDINVIKTLKLITLLNPEVCENIIYFSTASILD HHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC QNNRLLTKAGEIGTDYIRSKYDCMYQLSQLDNLPPLTCLFPTLVLGGDQEKPYSHLSAGL CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHCCH PEIIKHIGLIRWLKVDGSFHFIHAADIAQVVSYLVEHPPHSKELQKLILGNPKVTVNQVV HHHHHHHCCEEEEEECCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEHHHHH EEICAYLKKRIFFRFNLAPWLIEVIISVFKIQVAAWDRFCLEYRHFTYQNPINPASFKLP HHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC SYCPAIPDILRTRNLKFSPLNQKL CCCCHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SHKRIFITGASGCIGHYIVESLIQNTHHELYLLVRNPDKLKVDYKARPGVNLLKANLRE CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHH IEQFSSLLPEINVAILAATAWGNLQEVFDINVIKTLKLITLLNPEVCENIIYFSTASILD HHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC QNNRLLTKAGEIGTDYIRSKYDCMYQLSQLDNLPPLTCLFPTLVLGGDQEKPYSHLSAGL CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHCCH PEIIKHIGLIRWLKVDGSFHFIHAADIAQVVSYLVEHPPHSKELQKLILGNPKVTVNQVV HHHHHHHCCEEEEEECCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEHHHHH EEICAYLKKRIFFRFNLAPWLIEVIISVFKIQVAAWDRFCLEYRHFTYQNPINPASFKLP HHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC SYCPAIPDILRTRNLKFSPLNQKL CCCCHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA