| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is cysR [H]
Identifier: 113475346
GI number: 113475346
Start: 2529480
End: 2530019
Strand: Reverse
Name: cysR [H]
Synonym: Tery_1663
Alternate gene names: 113475346
Gene position: 2530019-2529480 (Counterclockwise)
Preceding gene: 113475347
Following gene: 113475343
Centisome position: 32.64
GC content: 32.04
Gene sequence:
>540_bases ATGACTGCATCCCCTAAGTTGAGGCATCATCAATTTAAACGTCATCAACTCATGCCATTAACAGATATATTATTATGGCG AATAGATACTGGAGTAGTTCGCACTTTAAGTAAAAATGAAGAAAAAAATGTTATTACTCTAGGATTTTGGGGTCAAGGAG ATATTGTTGGTCAACCTCTATTTCCTTTTTATCCTTATCAAGTTCAATGCTTAACTATTGTGCAAGCAAGTATTTTACCA AAGAGCTATTTTTATGCTCAAGAGGTAATGCTTTCTCATATTCAAAAAACTCAAGAACTATTAAGAATTATTCATTCTCG AAAAATTAAATTACGACTGCTGAGATTATTAAAATGGTTAACAGATCGATTTGGGAATCAACTGCCAGAAGGGAAAATAC TTAATATTCGCTTAACTCATCAAGAAATAGCTGAAATTATTTGTACTAGTCGTGTTACTGTTACGCGAATACTAAATGAG TTGGAGAAGGAAAATAAAATTGGGTGGTCACAGAGTAACTATTTAATTCTTTTTAACTAG
Upstream 100 bases:
>100_bases CAGCGGGAAGTACTGTAGCTGATGACTGACAGCTAAATACTTATAAAAATAATTATTATGCAACATAAACAGGAGAATAA AAGTGACCTTAAATTCAGTA
Downstream 100 bases:
>100_bases GGCTTGCTGGTTAATTCGCAAAGCATTGACACAAATTATGCTCATAGCCAACCAAATTTCGGGGTTTCTCAAAATACGAG AAGTCGGTGACTCAAGCTCA
Product: CRP/FNR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MTASPKLRHHQFKRHQLMPLTDILLWRIDTGVVRTLSKNEEKNVITLGFWGQGDIVGQPLFPFYPYQVQCLTIVQASILP KSYFYAQEVMLSHIQKTQELLRIIHSRKIKLRLLRLLKWLTDRFGNQLPEGKILNIRLTHQEIAEIICTSRVTVTRILNE LEKENKIGWSQSNYLILFN
Sequences:
>Translated_179_residues MTASPKLRHHQFKRHQLMPLTDILLWRIDTGVVRTLSKNEEKNVITLGFWGQGDIVGQPLFPFYPYQVQCLTIVQASILP KSYFYAQEVMLSHIQKTQELLRIIHSRKIKLRLLRLLKWLTDRFGNQLPEGKILNIRLTHQEIAEIICTSRVTVTRILNE LEKENKIGWSQSNYLILFN >Mature_178_residues TASPKLRHHQFKRHQLMPLTDILLWRIDTGVVRTLSKNEEKNVITLGFWGQGDIVGQPLFPFYPYQVQCLTIVQASILPK SYFYAQEVMLSHIQKTQELLRIIHSRKIKLRLLRLLKWLTDRFGNQLPEGKILNIRLTHQEIAEIICTSRVTVTRILNEL EKENKIGWSQSNYLILFN
Specific function: Probably regulates the expression of genes from the sulfate permease complex [H]
COG id: COG0664
COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH crp-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001808 - InterPro: IPR012318 - InterPro: IPR014710 - InterPro: IPR018335 - InterPro: IPR011991 [H]
Pfam domain/function: PF00325 Crp [H]
EC number: NA
Molecular weight: Translated: 21063; Mature: 20932
Theoretical pI: Translated: 10.42; Mature: 10.42
Prosite motif: PS51063 HTH_CRP_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASPKLRHHQFKRHQLMPLTDILLWRIDTGVVRTLSKNEEKNVITLGFWGQGDIVGQPL CCCCCCHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC FPFYPYQVQCLTIVQASILPKSYFYAQEVMLSHIQKTQELLRIIHSRKIKLRLLRLLKWL CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH TDRFGNQLPEGKILNIRLTHQEIAEIICTSRVTVTRILNELEKENKIGWSQSNYLILFN HHHHCCCCCCCEEEEEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEC >Mature Secondary Structure TASPKLRHHQFKRHQLMPLTDILLWRIDTGVVRTLSKNEEKNVITLGFWGQGDIVGQPL CCCCCHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC FPFYPYQVQCLTIVQASILPKSYFYAQEVMLSHIQKTQELLRIIHSRKIKLRLLRLLKWL CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH TDRFGNQLPEGKILNIRLTHQEIAEIICTSRVTVTRILNELEKENKIGWSQSNYLILFN HHHHCCCCCCCEEEEEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1708375 [H]