Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475305

Identifier: 113475305

GI number: 113475305

Start: 2469851

End: 2470195

Strand: Direct

Name: 113475305

Synonym: Tery_1614

Alternate gene names: NA

Gene position: 2469851-2470195 (Clockwise)

Preceding gene: 113475304

Following gene: 113475306

Centisome position: 31.87

GC content: 35.07

Gene sequence:

>345_bases
ATGTTAAGATTAGAAGCTTTGATACTTTTCACCGTATTATGTGGATTTTTCGGCATTATATTTAAGAAAAATTTGGTGAT
GAAAGTCATGTCAATGGATATTATGAGTACAGGGGTTATTGCTTATTATGTGTTGGTGGCATCACGAGATGGTGTATTCA
CTCCTATTATAAGTGAAAGGGAAAATGTTGTTGCTTATTCGGATCCTGTGCCTCAAGCGGTTATATTAACTGCCATTGTT
ATTGGTTTTTCAATTCAAGCTTTAATGCTGGTGGGTGTGATCAAGTTGTCAAAGGATAATCCTACTCTAGAAGCTAATGT
GATCGAAAAAAACAATCTGCCATAA

Upstream 100 bases:

>100_bases
TGACAATTTGCTAAAGTCTTATTAATAGATTATTTGGTTATATTGCCTTGTAAGATATAAATATTTAAACCAATTATTAA
CTACTAAATACTGAAATTAT

Downstream 100 bases:

>100_bases
CAATTGATAACTAAAGTGACCAATATGACAATTGCTTGGATGGCGTTGCCATTTTTTTGTGGGGTTAGTTATCTATCTAC
ATATCCAAACTTTATGGCTT

Product: putative monovalent cation/H+ antiporter subunit C

Products: NA

Alternate protein names: NADH-Ubiquinone Oxidoreductase Chain 4L; NADH-Ubiquinone Oxidoreductase Chain 4l

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MLRLEALILFTVLCGFFGIIFKKNLVMKVMSMDIMSTGVIAYYVLVASRDGVFTPIISERENVVAYSDPVPQAVILTAIV
IGFSIQALMLVGVIKLSKDNPTLEANVIEKNNLP

Sequences:

>Translated_114_residues
MLRLEALILFTVLCGFFGIIFKKNLVMKVMSMDIMSTGVIAYYVLVASRDGVFTPIISERENVVAYSDPVPQAVILTAIV
IGFSIQALMLVGVIKLSKDNPTLEANVIEKNNLP
>Mature_114_residues
MLRLEALILFTVLCGFFGIIFKKNLVMKVMSMDIMSTGVIAYYVLVASRDGVFTPIISERENVVAYSDPVPQAVILTAIV
IGFSIQALMLVGVIKLSKDNPTLEANVIEKNNLP

Specific function: Unknown

COG id: COG1006

COG function: function code P; Multisubunit Na+/H+ antiporter, MnhC subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12506; Mature: 12506

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLEALILFTVLCGFFGIIFKKNLVMKVMSMDIMSTGVIAYYVLVASRDGVFTPIISER
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ENVVAYSDPVPQAVILTAIVIGFSIQALMLVGVIKLSKDNPTLEANVIEKNNLP
CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MLRLEALILFTVLCGFFGIIFKKNLVMKVMSMDIMSTGVIAYYVLVASRDGVFTPIISER
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ENVVAYSDPVPQAVILTAIVIGFSIQALMLVGVIKLSKDNPTLEANVIEKNNLP
CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA