Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475291

Identifier: 113475291

GI number: 113475291

Start: 2447515

End: 2447886

Strand: Direct

Name: 113475291

Synonym: Tery_1600

Alternate gene names: NA

Gene position: 2447515-2447886 (Clockwise)

Preceding gene: 113475290

Following gene: 113475292

Centisome position: 31.58

GC content: 38.17

Gene sequence:

>372_bases
ATGGATAATTTGGGAGGAATTATTCAACGAGCTGTTTATCTAGGAGTAGGGTTAGCTTCCTATGCAGGAGAGAAAGCTAG
TCAAAAATTAACAGAACTAAGGATAGAAGCTCAAAAGCTGGCAGATGAAATGGTTAAGCGTGGTGAAATGACTACGGAAG
AAGGTCGTAAATTTGTGGAAGATATGATGAATAAATCAATGATGCAGGAAGCACCTGTGAATCAGTCTCCAGAAAAAGGA
CCTAATGAACCACGCCGTATAGAGATTATCTCGGATGATGAAGATTCATCTTCTTCAGATTCTACAGAAGTAGATAAAAT
GCGCCAAGAAGTACATAAGTTACAAGAGGAATTACGTCGACTACAAAAATAA

Upstream 100 bases:

>100_bases
TTGTCAGGACCGGAAGGTAGCAGCAACACGGGATGCTTGTAGTAGGCGTTGACTCCGGGTCACCCAACTAAAAGGAGCTC
ATAAGATAGGATACATATAT

Downstream 100 bases:

>100_bases
TAAATATATACTTATTAAGGTATATAGGTAGTCTAAGTTTTAAAGAAAAGCTAAAACATAACACTATAATGGAAGATTGG
TCAAAGAACTTCTTTGAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MDNLGGIIQRAVYLGVGLASYAGEKASQKLTELRIEAQKLADEMVKRGEMTTEEGRKFVEDMMNKSMMQEAPVNQSPEKG
PNEPRRIEIISDDEDSSSSDSTEVDKMRQEVHKLQEELRRLQK

Sequences:

>Translated_123_residues
MDNLGGIIQRAVYLGVGLASYAGEKASQKLTELRIEAQKLADEMVKRGEMTTEEGRKFVEDMMNKSMMQEAPVNQSPEKG
PNEPRRIEIISDDEDSSSSDSTEVDKMRQEVHKLQEELRRLQK
>Mature_123_residues
MDNLGGIIQRAVYLGVGLASYAGEKASQKLTELRIEAQKLADEMVKRGEMTTEEGRKFVEDMMNKSMMQEAPVNQSPEKG
PNEPRRIEIISDDEDSSSSDSTEVDKMRQEVHKLQEELRRLQK

Specific function: Unknown

COG id: COG3937

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13972; Mature: 13972

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLGGIIQRAVYLGVGLASYAGEKASQKLTELRIEAQKLADEMVKRGEMTTEEGRKFVE
CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
DMMNKSMMQEAPVNQSPEKGPNEPRRIEIISDDEDSSSSDSTEVDKMRQEVHKLQEELRR
HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LQK
HCC
>Mature Secondary Structure
MDNLGGIIQRAVYLGVGLASYAGEKASQKLTELRIEAQKLADEMVKRGEMTTEEGRKFVE
CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
DMMNKSMMQEAPVNQSPEKGPNEPRRIEIISDDEDSSSSDSTEVDKMRQEVHKLQEELRR
HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LQK
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA