| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475282
Identifier: 113475282
GI number: 113475282
Start: 2432525
End: 2433232
Strand: Reverse
Name: 113475282
Synonym: Tery_1591
Alternate gene names: NA
Gene position: 2433232-2432525 (Counterclockwise)
Preceding gene: 113475283
Following gene: 113475279
Centisome position: 31.4
GC content: 31.07
Gene sequence:
>708_bases ATGAAATTTTATAAGCCTTTTATTCAAAAAAAGTTGTCTGATAAAAATCATGATAAGACTGAAGACATTAGTTTACTTAT TAATCAAAATAAATCTTTGACAAAGCAAATACCTATTTGGCGGTTTGTTTTGCCTTTAACTTTGCAATTAGCATTAATTT TATCAGTTTCTGCCCAAGCTATTTATACTCACATTACAGGTAGAACAGTTATTTTACAAACTGCACCTGTAGACCCCTAT GATTTTTTGCGCGGTTATTATCAAGTTTTAAGTTATGATATTTCCCGCAAAGATAACTTGAGTAAACTTCCGGGTTGGCA TCAATTTGATTTTGAAACTTCAGGCAGATTTGATGGGGAAAATAAAACTAATATTTATGTAATTTTAGCTGAACCTGAAA AAATAAAAAATTCACAAATACCTAAAGCTTGGCAACCTATAGGTATAAGTTCAAAAATGCCAGAAAATTTGCCAGATAAC CAAATAGCTATTCAAGGAAAATTTGATGGTGGGAGAGTTAAATATGGCTTAGAAACTTATTTTATGCCAGAGGATAGACG AGAAAAAATTAATCAAGATATTCAGGAAGTACAAGATAGTGTTAATTCAGAAGAAGACATACCTTTTGTTATAGAAGCAA AAGTCAATTCTCAAGGTAAGGCTGTACCTGTGAGTTTGTGGGTTAGAGAGCGTAATTATATGTTTTAA
Upstream 100 bases:
>100_bases TGAATATTTACCCTTAAAACTATAGATATAAAATAATTTAACTAAATTACTTTAGTACCAAAATTTTTGCCATAAAAATA TTAATAAATGGAGAGATAAA
Downstream 100 bases:
>100_bases TATTCTTATTTTTCATGAAGTTTTAGCCCTAATATTATCACAAGTTAACTTGAAAATCGAAACTTATCTTGCTTAAGGAC TCATTGGTTTTAAGGGAACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 235; Mature: 235
Protein sequence:
>235_residues MKFYKPFIQKKLSDKNHDKTEDISLLINQNKSLTKQIPIWRFVLPLTLQLALILSVSAQAIYTHITGRTVILQTAPVDPY DFLRGYYQVLSYDISRKDNLSKLPGWHQFDFETSGRFDGENKTNIYVILAEPEKIKNSQIPKAWQPIGISSKMPENLPDN QIAIQGKFDGGRVKYGLETYFMPEDRREKINQDIQEVQDSVNSEEDIPFVIEAKVNSQGKAVPVSLWVRERNYMF
Sequences:
>Translated_235_residues MKFYKPFIQKKLSDKNHDKTEDISLLINQNKSLTKQIPIWRFVLPLTLQLALILSVSAQAIYTHITGRTVILQTAPVDPY DFLRGYYQVLSYDISRKDNLSKLPGWHQFDFETSGRFDGENKTNIYVILAEPEKIKNSQIPKAWQPIGISSKMPENLPDN QIAIQGKFDGGRVKYGLETYFMPEDRREKINQDIQEVQDSVNSEEDIPFVIEAKVNSQGKAVPVSLWVRERNYMF >Mature_235_residues MKFYKPFIQKKLSDKNHDKTEDISLLINQNKSLTKQIPIWRFVLPLTLQLALILSVSAQAIYTHITGRTVILQTAPVDPY DFLRGYYQVLSYDISRKDNLSKLPGWHQFDFETSGRFDGENKTNIYVILAEPEKIKNSQIPKAWQPIGISSKMPENLPDN QIAIQGKFDGGRVKYGLETYFMPEDRREKINQDIQEVQDSVNSEEDIPFVIEAKVNSQGKAVPVSLWVRERNYMF
Specific function: Unknown
COG id: COG4929
COG function: function code S; Uncharacterized membrane-anchored protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27201; Mature: 27201
Theoretical pI: Translated: 8.66; Mature: 8.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFYKPFIQKKLSDKNHDKTEDISLLINQNKSLTKQIPIWRFVLPLTLQLALILSVSAQA CCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHE IYTHITGRTVILQTAPVDPYDFLRGYYQVLSYDISRKDNLSKLPGWHQFDFETSGRFDGE EEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCEEECCCCCCCCCCC NKTNIYVILAEPEKIKNSQIPKAWQPIGISSKMPENLPDNQIAIQGKFDGGRVKYGLETY CCCEEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECEEEE FMPEDRREKINQDIQEVQDSVNSEEDIPFVIEAKVNSQGKAVPVSLWVRERNYMF ECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCC >Mature Secondary Structure MKFYKPFIQKKLSDKNHDKTEDISLLINQNKSLTKQIPIWRFVLPLTLQLALILSVSAQA CCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHE IYTHITGRTVILQTAPVDPYDFLRGYYQVLSYDISRKDNLSKLPGWHQFDFETSGRFDGE EEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCEEECCCCCCCCCCC NKTNIYVILAEPEKIKNSQIPKAWQPIGISSKMPENLPDNQIAIQGKFDGGRVKYGLETY CCCEEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECEEEE FMPEDRREKINQDIQEVQDSVNSEEDIPFVIEAKVNSQGKAVPVSLWVRERNYMF ECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA