| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475283
Identifier: 113475283
GI number: 113475283
Start: 2433568
End: 2434164
Strand: Reverse
Name: 113475283
Synonym: Tery_1592
Alternate gene names: NA
Gene position: 2434164-2433568 (Counterclockwise)
Preceding gene: 113475286
Following gene: 113475282
Centisome position: 31.41
GC content: 30.49
Gene sequence:
>597_bases ATGCCGTACAGTAAATTCACTTTAGAAGAAGTTTTAACTAAGTTCAATTTAACTTTAGTCGAAAACTTAGGGAAATTTAA TAATTTACCAGACGTAGCTCCTAGTAAACTGTTAGAAGAAACCTTAGAAGACAATATACCATTAGCAGTAGCGATTGGTA CTGAAAAAGCTCGTTCAGAATTAATAGTATCGCCAATTTTAGTGGCAGTTAGAAAACATTTAAACAAACAAATAAGTTTA TTTTCTGGTATAGAATTTAATGTCAATATTGAATTAGGATTAAGTGGTTTTTGCGATTTTATTATTAGTCTTTCTAGCCT ACAAACCATAATTAAAGCACCAGTAGTTACCTTAGTAGAGGCGAAAAATGATAATATAAAATCTGGTTTTGGTCAATGTC TGGCGGAAATGGTTGCAGCTCAAATTTTTAACAAAAATAAAGGGAATCAAATTTCTCAAATTTATGGTGCTATTACCACT GGAACTGCTTGGCAATTTTTAGAGTTAGAAGGTGAAAATGTAGTATTAGATTTAGAGGAATATTCCCTCAAAAATTTACC GAAACTTTTAGGAGTTTTAATTAGTTTTGTTAGTTAG
Upstream 100 bases:
>100_bases TAGCTATAAAGTGGTATGATATTTTAAAGTTCTTTATTTGCTCAAAAATTGCTCAAAAATTGCTCAAAAATTGCTCAAAA ATTGCTCAAAAATTTACATA
Downstream 100 bases:
>100_bases TATAATCAATAATTTATGAAATATATGAAGATTATAATTTAATTCACAAAATACCAATTTTATAAATAAAAAAAACTATA AAAATAAATATTCAGAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MPYSKFTLEEVLTKFNLTLVENLGKFNNLPDVAPSKLLEETLEDNIPLAVAIGTEKARSELIVSPILVAVRKHLNKQISL FSGIEFNVNIELGLSGFCDFIISLSSLQTIIKAPVVTLVEAKNDNIKSGFGQCLAEMVAAQIFNKNKGNQISQIYGAITT GTAWQFLELEGENVVLDLEEYSLKNLPKLLGVLISFVS
Sequences:
>Translated_198_residues MPYSKFTLEEVLTKFNLTLVENLGKFNNLPDVAPSKLLEETLEDNIPLAVAIGTEKARSELIVSPILVAVRKHLNKQISL FSGIEFNVNIELGLSGFCDFIISLSSLQTIIKAPVVTLVEAKNDNIKSGFGQCLAEMVAAQIFNKNKGNQISQIYGAITT GTAWQFLELEGENVVLDLEEYSLKNLPKLLGVLISFVS >Mature_197_residues PYSKFTLEEVLTKFNLTLVENLGKFNNLPDVAPSKLLEETLEDNIPLAVAIGTEKARSELIVSPILVAVRKHLNKQISLF SGIEFNVNIELGLSGFCDFIISLSSLQTIIKAPVVTLVEAKNDNIKSGFGQCLAEMVAAQIFNKNKGNQISQIYGAITTG TAWQFLELEGENVVLDLEEYSLKNLPKLLGVLISFVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21731; Mature: 21599
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYSKFTLEEVLTKFNLTLVENLGKFNNLPDVAPSKLLEETLEDNIPLAVAIGTEKARSE CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHH LIVSPILVAVRKHLNKQISLFSGIEFNVNIELGLSGFCDFIISLSSLQTIIKAPVVTLVE HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHEEE AKNDNIKSGFGQCLAEMVAAQIFNKNKGNQISQIYGAITTGTAWQFLELEGENVVLDLEE CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCEEEEEHHH YSLKNLPKLLGVLISFVS HHHHHHHHHHHHHHHHCC >Mature Secondary Structure PYSKFTLEEVLTKFNLTLVENLGKFNNLPDVAPSKLLEETLEDNIPLAVAIGTEKARSE CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHH LIVSPILVAVRKHLNKQISLFSGIEFNVNIELGLSGFCDFIISLSSLQTIIKAPVVTLVE HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHEEE AKNDNIKSGFGQCLAEMVAAQIFNKNKGNQISQIYGAITTGTAWQFLELEGENVVLDLEE CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCEEEEEHHH YSLKNLPKLLGVLISFVS HHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA