| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475255
Identifier: 113475255
GI number: 113475255
Start: 2389285
End: 2389629
Strand: Reverse
Name: 113475255
Synonym: Tery_1563
Alternate gene names: NA
Gene position: 2389629-2389285 (Counterclockwise)
Preceding gene: 113475258
Following gene: 113475252
Centisome position: 30.83
GC content: 28.41
Gene sequence:
>345_bases ATGGCTTACTATACTGCTATATTGACTATTGCTGTCAAGATCGAAAGTTTACAACCAGTTTTTACAGAGATATTAAATAA TTGTGGTTGTGAAATTATCTATACCCAAAAATACTATTTAATGGCTCGTGAATTTCCTGGCCAAGTTTCTTTCTCCCAAC TTGTCACTATAGAAATAACTCTTTACAGAGTAACTAATAATTCTGAAAATATCCAACTAAATATAGTTACAAGAAATGAA GAACTCCCTTTAAAATCAAGTAATCATTGTAGTCAAGTATTTGATTTATTAACTTACTTGATAGTAGAAAATTCTAATTG GGAACTTTTGGAAAGAATTATTTAA
Upstream 100 bases:
>100_bases TCTACACCTTCAAAAACTATAAATTTGCCTATCATTATGTAAGTTCTAATTAATTAATTATATTTAATTTTAAGTGTTTT TTCTCTGATTGGAGTTTTTT
Downstream 100 bases:
>100_bases GAGAATAGAAAATAGGAGCTAGAAGGGGGATAAAATTATCCTCTCCTTTCCTTATATAGTAGTCACCATTACTCCCCTAA ACATTTTTACCATTCTTAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 114; Mature: 113
Protein sequence:
>114_residues MAYYTAILTIAVKIESLQPVFTEILNNCGCEIIYTQKYYLMAREFPGQVSFSQLVTIEITLYRVTNNSENIQLNIVTRNE ELPLKSSNHCSQVFDLLTYLIVENSNWELLERII
Sequences:
>Translated_114_residues MAYYTAILTIAVKIESLQPVFTEILNNCGCEIIYTQKYYLMAREFPGQVSFSQLVTIEITLYRVTNNSENIQLNIVTRNE ELPLKSSNHCSQVFDLLTYLIVENSNWELLERII >Mature_113_residues AYYTAILTIAVKIESLQPVFTEILNNCGCEIIYTQKYYLMAREFPGQVSFSQLVTIEITLYRVTNNSENIQLNIVTRNEE LPLKSSNHCSQVFDLLTYLIVENSNWELLERII
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13243; Mature: 13112
Theoretical pI: Translated: 4.41; Mature: 4.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYYTAILTIAVKIESLQPVFTEILNNCGCEIIYTQKYYLMAREFPGQVSFSQLVTIEIT CHHHHEEEEEEEEECCCCHHHHHHHHCCCCEEEEECEEEEEEECCCCCCCCCEEEEEEEE LYRVTNNSENIQLNIVTRNEELPLKSSNHCSQVFDLLTYLIVENSNWELLERII EEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHEEECCCHHHHHHCC >Mature Secondary Structure AYYTAILTIAVKIESLQPVFTEILNNCGCEIIYTQKYYLMAREFPGQVSFSQLVTIEIT HHHHEEEEEEEEECCCCHHHHHHHHCCCCEEEEECEEEEEEECCCCCCCCCEEEEEEEE LYRVTNNSENIQLNIVTRNEELPLKSSNHCSQVFDLLTYLIVENSNWELLERII EEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHEEECCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA