| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475250
Identifier: 113475250
GI number: 113475250
Start: 2377529
End: 2379259
Strand: Direct
Name: 113475250
Synonym: Tery_1558
Alternate gene names: NA
Gene position: 2377529-2379259 (Clockwise)
Preceding gene: 113475246
Following gene: 113475251
Centisome position: 30.68
GC content: 29.98
Gene sequence:
>1731_bases TTGAAAAAGCAGAGTAACCGAATTCAATCAATAATCTTTGAGATAGATGAGGTACTAAGTCAATCTAGTACCGAAAGTTA TTGTCAAACTATTGAAGAAACACTGAAAAAATCTCAACATATACTACAGGAAACTCTAGACTATCTGAGTGAAGACCCAG ATAATAGCTCCAATTTACAGCTACCCTCTATTGACACAGATTTAGCTTCAGAAGACACTACTGACTTTCAGATTAAACAA CATCTAATAGAAAAGTTTTTTGCCCCTATTAACGAATATATACAGGAAGATTTCACCATACTTAAAAAACAACGGCAAGC TCTGCAAGAAGAAATTAGGGGACTTGAAAAGCAAATAGAGGAAAATTCTTCTCTAGCTCAACAATACGCTAAACAAGAGC AAATTATTTTTGAGTTTTCTCAAGTTTTACTTGGCCAGATACAAGAAATTTTGGTTGAACATTTGTTTTGCCTAGCAACT CAATATTTATCTCCTGCTGAAGGTGGTTTATCCTCTAAAAAATATATTTCCCTACAGAATATGAAGGATATGGAAACCTC TGAAGTGATAAAAATTTTCGAGGATAAACTAGAGGAAAGTTCTAAATATAATCACTCATTGATTGATGATTCAAATAATT ATAATAGTGAGCAAAAAAAGCAAACTCAAGAAAATAATACAGAAGCAAATATGAATGATAAAAATTATCAAAATAAAAAG CTATCCCCTCAAATAGATAGGTCAAATCAACCAATAGATAAATTCCCATTGCCTTATCCAGGTTATGAGTTTTTTGGAAA TGTAGAGATGGAATCAAAAACAACAGAAACAGAAAAAAAAAAGCATCAATTAGAAAAATTAAATAGTCAAGCATTTTCTC TAGAAGATAAGTCTAAGATTAACGAAAAGCAAGATTTAGAAACTATTAAAACTCATCAATATCCAAATGAAATTTATGCT GGACTAAAACCTCCTAGTTTTGATGATAATGATATAGAAAATCAAAACTATCAAAATCAATCTTTAACAATAAAAGATGA AGTACCAATAGTCCCAGAATTGAAATTAGATGCCTCAGAAAATAGAGACAATTTAGACAATCCTGAAGTCCTAGAATCTC TGAGCAACTTATTTGGAAAGCTAGAAGTCGATAAAGAATCAAATAACAAATTAATTACTACTACAAAAAATCAACGAAAT TTCAAAATTTCCACAGCTCAATTAGAAGAAGATACATATACTCAAGAATCTCTAAGACAAAGTCTATTACCTGTAGAAGA ACCTGATAAAAAACCTAAGGAATTTTTATTAGATAATCAAACTCTACAATGTTTGCGTTCTGATTTAGATAGTTTAGAAG AAATTGATGGAAATGAATTAATAGATGATCAGGAGCAAACTAAATTACAATTAGAAGAATATCAGAATGGAGATTTAACA GAAAATACTCCCGGGTTTTCTGAGGATAGTTTGGTTATGACTTCAGAAGCAGAATTTACTAATTTAGAGGATTTGTTCAT AAGTGTTGATGAGCAAAAAAAATCCAGAACGAGTCAACAAGAAAATATTTATGGTTCAGCAGAAAATACAACAAATAAAG TAACTCTAGAAGATTTTTTGGATGACTCAAGATTAGAAATAGATGAAAAAATAACGGAAACAGATAATCAGGAATTTTCT CCTCTAGAAACTTTACTTCAAGAGAAAAAAAATTCAGAAAAAAAAATTTGA
Upstream 100 bases:
>100_bases TTGTATATCCACTAGGGAAAAGAAAGAAAAAAATTTACTTAGATTATACTTTTATAAGTTCTATGATTCCTAATAATTGG TGATTAAAGGGGTAGTAATT
Downstream 100 bases:
>100_bases GTTCATTAGAAATGGAAGCTGATATAACACTAGATCAGGCAACTTTACCATGGTATTTAGGAATTGATTTTGGTACTACT AGTATTTCCGCAGCGTTATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 576; Mature: 576
Protein sequence:
>576_residues MKKQSNRIQSIIFEIDEVLSQSSTESYCQTIEETLKKSQHILQETLDYLSEDPDNSSNLQLPSIDTDLASEDTTDFQIKQ HLIEKFFAPINEYIQEDFTILKKQRQALQEEIRGLEKQIEENSSLAQQYAKQEQIIFEFSQVLLGQIQEILVEHLFCLAT QYLSPAEGGLSSKKYISLQNMKDMETSEVIKIFEDKLEESSKYNHSLIDDSNNYNSEQKKQTQENNTEANMNDKNYQNKK LSPQIDRSNQPIDKFPLPYPGYEFFGNVEMESKTTETEKKKHQLEKLNSQAFSLEDKSKINEKQDLETIKTHQYPNEIYA GLKPPSFDDNDIENQNYQNQSLTIKDEVPIVPELKLDASENRDNLDNPEVLESLSNLFGKLEVDKESNNKLITTTKNQRN FKISTAQLEEDTYTQESLRQSLLPVEEPDKKPKEFLLDNQTLQCLRSDLDSLEEIDGNELIDDQEQTKLQLEEYQNGDLT ENTPGFSEDSLVMTSEAEFTNLEDLFISVDEQKKSRTSQQENIYGSAENTTNKVTLEDFLDDSRLEIDEKITETDNQEFS PLETLLQEKKNSEKKI
Sequences:
>Translated_576_residues MKKQSNRIQSIIFEIDEVLSQSSTESYCQTIEETLKKSQHILQETLDYLSEDPDNSSNLQLPSIDTDLASEDTTDFQIKQ HLIEKFFAPINEYIQEDFTILKKQRQALQEEIRGLEKQIEENSSLAQQYAKQEQIIFEFSQVLLGQIQEILVEHLFCLAT QYLSPAEGGLSSKKYISLQNMKDMETSEVIKIFEDKLEESSKYNHSLIDDSNNYNSEQKKQTQENNTEANMNDKNYQNKK LSPQIDRSNQPIDKFPLPYPGYEFFGNVEMESKTTETEKKKHQLEKLNSQAFSLEDKSKINEKQDLETIKTHQYPNEIYA GLKPPSFDDNDIENQNYQNQSLTIKDEVPIVPELKLDASENRDNLDNPEVLESLSNLFGKLEVDKESNNKLITTTKNQRN FKISTAQLEEDTYTQESLRQSLLPVEEPDKKPKEFLLDNQTLQCLRSDLDSLEEIDGNELIDDQEQTKLQLEEYQNGDLT ENTPGFSEDSLVMTSEAEFTNLEDLFISVDEQKKSRTSQQENIYGSAENTTNKVTLEDFLDDSRLEIDEKITETDNQEFS PLETLLQEKKNSEKKI >Mature_576_residues MKKQSNRIQSIIFEIDEVLSQSSTESYCQTIEETLKKSQHILQETLDYLSEDPDNSSNLQLPSIDTDLASEDTTDFQIKQ HLIEKFFAPINEYIQEDFTILKKQRQALQEEIRGLEKQIEENSSLAQQYAKQEQIIFEFSQVLLGQIQEILVEHLFCLAT QYLSPAEGGLSSKKYISLQNMKDMETSEVIKIFEDKLEESSKYNHSLIDDSNNYNSEQKKQTQENNTEANMNDKNYQNKK LSPQIDRSNQPIDKFPLPYPGYEFFGNVEMESKTTETEKKKHQLEKLNSQAFSLEDKSKINEKQDLETIKTHQYPNEIYA GLKPPSFDDNDIENQNYQNQSLTIKDEVPIVPELKLDASENRDNLDNPEVLESLSNLFGKLEVDKESNNKLITTTKNQRN FKISTAQLEEDTYTQESLRQSLLPVEEPDKKPKEFLLDNQTLQCLRSDLDSLEEIDGNELIDDQEQTKLQLEEYQNGDLT ENTPGFSEDSLVMTSEAEFTNLEDLFISVDEQKKSRTSQQENIYGSAENTTNKVTLEDFLDDSRLEIDEKITETDNQEFS PLETLLQEKKNSEKKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66731; Mature: 66731
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKQSNRIQSIIFEIDEVLSQSSTESYCQTIEETLKKSQHILQETLDYLSEDPDNSSNLQ CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE LPSIDTDLASEDTTDFQIKQHLIEKFFAPINEYIQEDFTILKKQRQALQEEIRGLEKQIE CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENSSLAQQYAKQEQIIFEFSQVLLGQIQEILVEHLFCLATQYLSPAEGGLSSKKYISLQN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCC MKDMETSEVIKIFEDKLEESSKYNHSLIDDSNNYNSEQKKQTQENNTEANMNDKNYQNKK CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC LSPQIDRSNQPIDKFPLPYPGYEFFGNVEMESKTTETEKKKHQLEKLNSQAFSLEDKSKI CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHC NEKQDLETIKTHQYPNEIYAGLKPPSFDDNDIENQNYQNQSLTIKDEVPIVPELKLDASE CHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC NRDNLDNPEVLESLSNLFGKLEVDKESNNKLITTTKNQRNFKISTAQLEEDTYTQESLRQ CCCCCCCHHHHHHHHHHHCCEEECCCCCCEEEEEECCCCCEEEEHHHHCHHHHHHHHHHH SLLPVEEPDKKPKEFLLDNQTLQCLRSDLDSLEEIDGNELIDDQEQTKLQLEEYQNGDLT HCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC ENTPGFSEDSLVMTSEAEFTNLEDLFISVDEQKKSRTSQQENIYGSAENTTNKVTLEDFL CCCCCCCCCCEEEECCCCCCCHHHHHEECCHHHHHHCHHHHHCCCCCCCCCCEEEHHHHC DDSRLEIDEKITETDNQEFSPLETLLQEKKNSEKKI CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC >Mature Secondary Structure MKKQSNRIQSIIFEIDEVLSQSSTESYCQTIEETLKKSQHILQETLDYLSEDPDNSSNLQ CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE LPSIDTDLASEDTTDFQIKQHLIEKFFAPINEYIQEDFTILKKQRQALQEEIRGLEKQIE CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENSSLAQQYAKQEQIIFEFSQVLLGQIQEILVEHLFCLATQYLSPAEGGLSSKKYISLQN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCC MKDMETSEVIKIFEDKLEESSKYNHSLIDDSNNYNSEQKKQTQENNTEANMNDKNYQNKK CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC LSPQIDRSNQPIDKFPLPYPGYEFFGNVEMESKTTETEKKKHQLEKLNSQAFSLEDKSKI CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHC NEKQDLETIKTHQYPNEIYAGLKPPSFDDNDIENQNYQNQSLTIKDEVPIVPELKLDASE CHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC NRDNLDNPEVLESLSNLFGKLEVDKESNNKLITTTKNQRNFKISTAQLEEDTYTQESLRQ CCCCCCCHHHHHHHHHHHCCEEECCCCCCEEEEEECCCCCEEEEHHHHCHHHHHHHHHHH SLLPVEEPDKKPKEFLLDNQTLQCLRSDLDSLEEIDGNELIDDQEQTKLQLEEYQNGDLT HCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC ENTPGFSEDSLVMTSEAEFTNLEDLFISVDEQKKSRTSQQENIYGSAENTTNKVTLEDFL CCCCCCCCCCEEEECCCCCCCHHHHHEECCHHHHHHCHHHHHCCCCCCCCCCEEEHHHHC DDSRLEIDEKITETDNQEFSPLETLLQEKKNSEKKI CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA