Click here to switch to the map view.

The map label for this gene is rfbU [H]

Identifier: 113475232

GI number: 113475232

Start: 2336377

End: 2337459

Strand: Direct

Name: rfbU [H]

Synonym: Tery_1539

Alternate gene names: 113475232

Gene position: 2336377-2337459 (Clockwise)

Preceding gene: 113475231

Following gene: 113475233

Centisome position: 30.15

GC content: 34.26

Gene sequence:

>1083_bases
ATGTCTAATAAAGTTCTTATTAACTTATCAGTATTAATTCCCCAACCTACAGGAATATCTGTCTATGCTAATAATATTTT
GCCACAGCTTCAGCCACTTAATCCTATTCTATTAGTTGCTAATAATATTCCCAAATTTAACTGCCATCTTATCCCTAATA
ATATGACTCCCGCTCAGGGAACTATAGGTCATTTTCGACGATTATTTTGGACTCAATTTCAATTATCAAATATATCTAAA
AAATTACAAGCAAATCTAATTTTTTCTCCCCTTCCAGAAGCGCCATTATTTTCTGAATGTCCTTATATTGTCATGGCTCA
TGATTTAATTCCTTTGCGTTTTCCTAAACCTGGTTCTCGCTTAACTGCTTATTTCAAATATTACATTCCCCAAGTATTAA
GTCAGGCAAAACATATTATTTGTAATTCCCAAGCTACGGCAAAAGATATTACTGATTTTTTCAAAATATCACCTCAAAAA
ATTACTCCTATTCCTCTAGGTTATGATTCTCAAAGATTCCAATTTTTAGATTTACCGACAAAAAATTATTTTCTTTATCT
CGGTCGGCACGACCATTATAAAAATTTGCATCGGTTGATCGAAGCTTTTACTAATTTGCCAAATTTTTCTGAGTATGAAT
TATGGTTTGCCGGACCTACAGATAATATTTATACACCAACATTAAAAACTCAAATCAAAGAACTAGGTTTAACAAATTTA
GTGAAATTTCTTGATTATGTTTCTACAGAAGAATTACCCAAAATAATTAGTCAGGCGATCGCTATGGTTTTTCCTAGTTT
GTGGGAAGGGTTTGGTTTTCCAGTATTGGAGGCGATGGCTTGTGGTACTCCTGTTATTACTTCTAATATTTCATCTCTGC
CAGAAGTTGCTGGAGATGCTGCTATTTTGGTTAACCCGAAAAATGTGGGAGAAATAACTGATGCGATGAATATTATTGCT
CAAGATGGGGGGGAGCGATCGCGTCTGATGAGCTTAAGTTTGGCTAGAGCTAAAGAGTTTAGTTGGGAAAAAACTGGTTT
AGCTACTAGGGAGATAATTCAGCAATTTTCTGTATCAGGTTGA

Upstream 100 bases:

>100_bases
GATCTGAACCTTGAAGTAAAAATGTTGGGTTGCCCTGGGATATATTGCTGGGTTCTCAGAACCAACTTACGGTATTTAAA
ATTATTGTCTCTAAGTGTCA

Downstream 100 bases:

>100_bases
AATAATGAGAGCGATCGCTCTTTTTGAATTCAGGGCTATCTTTTTAGGGAAAGCGATCGCTATTCACCCACAACTATTAG
GGACATATAGGCCAGAAAAT

Product: group 1 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MSNKVLINLSVLIPQPTGISVYANNILPQLQPLNPILLVANNIPKFNCHLIPNNMTPAQGTIGHFRRLFWTQFQLSNISK
KLQANLIFSPLPEAPLFSECPYIVMAHDLIPLRFPKPGSRLTAYFKYYIPQVLSQAKHIICNSQATAKDITDFFKISPQK
ITPIPLGYDSQRFQFLDLPTKNYFLYLGRHDHYKNLHRLIEAFTNLPNFSEYELWFAGPTDNIYTPTLKTQIKELGLTNL
VKFLDYVSTEELPKIISQAIAMVFPSLWEGFGFPVLEAMACGTPVITSNISSLPEVAGDAAILVNPKNVGEITDAMNIIA
QDGGERSRLMSLSLARAKEFSWEKTGLATREIIQQFSVSG

Sequences:

>Translated_360_residues
MSNKVLINLSVLIPQPTGISVYANNILPQLQPLNPILLVANNIPKFNCHLIPNNMTPAQGTIGHFRRLFWTQFQLSNISK
KLQANLIFSPLPEAPLFSECPYIVMAHDLIPLRFPKPGSRLTAYFKYYIPQVLSQAKHIICNSQATAKDITDFFKISPQK
ITPIPLGYDSQRFQFLDLPTKNYFLYLGRHDHYKNLHRLIEAFTNLPNFSEYELWFAGPTDNIYTPTLKTQIKELGLTNL
VKFLDYVSTEELPKIISQAIAMVFPSLWEGFGFPVLEAMACGTPVITSNISSLPEVAGDAAILVNPKNVGEITDAMNIIA
QDGGERSRLMSLSLARAKEFSWEKTGLATREIIQQFSVSG
>Mature_359_residues
SNKVLINLSVLIPQPTGISVYANNILPQLQPLNPILLVANNIPKFNCHLIPNNMTPAQGTIGHFRRLFWTQFQLSNISKK
LQANLIFSPLPEAPLFSECPYIVMAHDLIPLRFPKPGSRLTAYFKYYIPQVLSQAKHIICNSQATAKDITDFFKISPQKI
TPIPLGYDSQRFQFLDLPTKNYFLYLGRHDHYKNLHRLIEAFTNLPNFSEYELWFAGPTDNIYTPTLKTQIKELGLTNLV
KFLDYVSTEELPKIISQAIAMVFPSLWEGFGFPVLEAMACGTPVITSNISSLPEVAGDAAILVNPKNVGEITDAMNIIAQ
DGGERSRLMSLSLARAKEFSWEKTGLATREIIQQFSVSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 40432; Mature: 40301

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS00327 BACTERIAL_OPSIN_RET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKVLINLSVLIPQPTGISVYANNILPQLQPLNPILLVANNIPKFNCHLIPNNMTPAQG
CCCEEEEEEEEEECCCCCCEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCC
TIGHFRRLFWTQFQLSNISKKLQANLIFSPLPEAPLFSECPYIVMAHDLIPLRFPKPGSR
HHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCEEEEECCEEEECCCCCCHH
LTAYFKYYIPQVLSQAKHIICNSQATAKDITDFFKISPQKITPIPLGYDSQRFQFLDLPT
HHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC
KNYFLYLGRHDHYKNLHRLIEAFTNLPNFSEYELWFAGPTDNIYTPTLKTQIKELGLTNL
CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCHHHH
VKFLDYVSTEELPKIISQAIAMVFPSLWEGFGFPVLEAMACGTPVITSNISSLPEVAGDA
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHCHHHHHHHCCCE
AILVNPKNVGEITDAMNIIAQDGGERSRLMSLSLARAKEFSWEKTGLATREIIQQFSVSG
EEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
SNKVLINLSVLIPQPTGISVYANNILPQLQPLNPILLVANNIPKFNCHLIPNNMTPAQG
CCEEEEEEEEEECCCCCCEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCC
TIGHFRRLFWTQFQLSNISKKLQANLIFSPLPEAPLFSECPYIVMAHDLIPLRFPKPGSR
HHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCEEEEECCEEEECCCCCCHH
LTAYFKYYIPQVLSQAKHIICNSQATAKDITDFFKISPQKITPIPLGYDSQRFQFLDLPT
HHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC
KNYFLYLGRHDHYKNLHRLIEAFTNLPNFSEYELWFAGPTDNIYTPTLKTQIKELGLTNL
CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCHHHH
VKFLDYVSTEELPKIISQAIAMVFPSLWEGFGFPVLEAMACGTPVITSNISSLPEVAGDA
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHCHHHHHHHCCCE
AILVNPKNVGEITDAMNIIAQDGGERSRLMSLSLARAKEFSWEKTGLATREIIQQFSVSG
EEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]