| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475212
Identifier: 113475212
GI number: 113475212
Start: 2302943
End: 2304043
Strand: Reverse
Name: 113475212
Synonym: Tery_1515
Alternate gene names: NA
Gene position: 2304043-2302943 (Counterclockwise)
Preceding gene: 113475216
Following gene: 113475211
Centisome position: 29.73
GC content: 36.88
Gene sequence:
>1101_bases ATGCGCCTAAAATCTCTCGATGTATTTCGTGGCATCACAATTGCTAGTATGATTATTGTTAATAACCCAGGCAGTTGGAA TCATGTTTATCCACCCTTACTTCATGCAAAATGGCATGGTTGTACTCCCACAGATTTAATATTTCCCTTCTTCTTATTTA TCATGGGTGTAGCTATGACCTTTTCCCTGTCAAAATACACCGATAAAAATCAACCTATTCCACACATTTACCAAAGAATT TTCCGCCGATGCCTCATAATTTTCCTGTTTGGTTTGCTACTAAATGGCTTTCCTAATTACAACTTAGCCACTATTAGGGT TATGGGAGTATTACAACGTATTAGTCTAGTCTATCTTCTCGCAGCAATAGCCATCCTTAACTTGTCCCGAAAACAACTTT ATGGACTTGCCACTACCCTGCTAATTGGATACTGGATAGCCATGCAACTAATACCTGTTCCTGGTTATGGTCTTGGGAAC CTTTCTCCAGAAGGAAACTTTGCTGCCTATATTGATCGCTTGATCCTAACTCAACAACATTTGTGGGCAGGCAAACAATA CGACCCAGAAGGACTTTTTAGCACCTTACCAGCTATAGTAACTGTTTTGATTGGTTACCTTACAGGAGAATGGCTCAAAC ATCAATCAACAAACAGTCGTACTACCTTAAATATGGTAATTTCTGGTCTAAGTTGTTTAGTAGTCGGGTATCTTTGGGGA CTATTTTTTCCCATTAATAAAGCTTTATGGACAAGTTCTTATGTAATATTTACTGCCGGATGGGCCTTGCTGTTTTTAGC TATTTGTTATCAGGCCATGGAGGTTCGAGGCTGGCATAAATGGGGACATCCATTTGAAGTGATGGGATTAAATGCCATAT TTATATTTATTGGCTCTGGATTTTTGGCCAGGGTAATGATTTATAATAATATTAATAGAGCTGAAAATTCCCCTACAATT AAAATATGGATATATGAACATTTTTTTCAATCTTGGGCAGGTTCATTTAATGGTTCTTTACTCTTTGCTATTGTCAATTT ATTATTTTGGTGGAAAATTTCTGATTTAATGTATCGTCGCAGTTTGTTTATTAAAGTTTAA
Upstream 100 bases:
>100_bases ATAATTCCTAATTATTTACCTGTTTAATAAAATAGCTTTTCTTGCCAATAATAACCAAAATGACTTAGTATAATCTCCTA CTATAAAAACTAAAATCAAA
Downstream 100 bases:
>100_bases AGAAAGTAAGTATTCAGCTATCAACTATCAGCACCTTAGCCATAAAAATAAAAGTAGTTAAGTAGGTAAACAATTAGGAA TTACATATTGATTGAAACTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 366; Mature: 366
Protein sequence:
>366_residues MRLKSLDVFRGITIASMIIVNNPGSWNHVYPPLLHAKWHGCTPTDLIFPFFLFIMGVAMTFSLSKYTDKNQPIPHIYQRI FRRCLIIFLFGLLLNGFPNYNLATIRVMGVLQRISLVYLLAAIAILNLSRKQLYGLATTLLIGYWIAMQLIPVPGYGLGN LSPEGNFAAYIDRLILTQQHLWAGKQYDPEGLFSTLPAIVTVLIGYLTGEWLKHQSTNSRTTLNMVISGLSCLVVGYLWG LFFPINKALWTSSYVIFTAGWALLFLAICYQAMEVRGWHKWGHPFEVMGLNAIFIFIGSGFLARVMIYNNINRAENSPTI KIWIYEHFFQSWAGSFNGSLLFAIVNLLFWWKISDLMYRRSLFIKV
Sequences:
>Translated_366_residues MRLKSLDVFRGITIASMIIVNNPGSWNHVYPPLLHAKWHGCTPTDLIFPFFLFIMGVAMTFSLSKYTDKNQPIPHIYQRI FRRCLIIFLFGLLLNGFPNYNLATIRVMGVLQRISLVYLLAAIAILNLSRKQLYGLATTLLIGYWIAMQLIPVPGYGLGN LSPEGNFAAYIDRLILTQQHLWAGKQYDPEGLFSTLPAIVTVLIGYLTGEWLKHQSTNSRTTLNMVISGLSCLVVGYLWG LFFPINKALWTSSYVIFTAGWALLFLAICYQAMEVRGWHKWGHPFEVMGLNAIFIFIGSGFLARVMIYNNINRAENSPTI KIWIYEHFFQSWAGSFNGSLLFAIVNLLFWWKISDLMYRRSLFIKV >Mature_366_residues MRLKSLDVFRGITIASMIIVNNPGSWNHVYPPLLHAKWHGCTPTDLIFPFFLFIMGVAMTFSLSKYTDKNQPIPHIYQRI FRRCLIIFLFGLLLNGFPNYNLATIRVMGVLQRISLVYLLAAIAILNLSRKQLYGLATTLLIGYWIAMQLIPVPGYGLGN LSPEGNFAAYIDRLILTQQHLWAGKQYDPEGLFSTLPAIVTVLIGYLTGEWLKHQSTNSRTTLNMVISGLSCLVVGYLWG LFFPINKALWTSSYVIFTAGWALLFLAICYQAMEVRGWHKWGHPFEVMGLNAIFIFIGSGFLARVMIYNNINRAENSPTI KIWIYEHFFQSWAGSFNGSLLFAIVNLLFWWKISDLMYRRSLFIKV
Specific function: Unknown
COG id: COG4299
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI150378452, Length=423, Percent_Identity=26.9503546099291, Blast_Score=126, Evalue=3e-29, Organism=Drosophila melanogaster, GI24639786, Length=353, Percent_Identity=31.728045325779, Blast_Score=139, Evalue=4e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41846; Mature: 41846
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLKSLDVFRGITIASMIIVNNPGSWNHVYPPLLHAKWHGCTPTDLIFPFFLFIMGVAMT CCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH FSLSKYTDKNQPIPHIYQRIFRRCLIIFLFGLLLNGFPNYNLATIRVMGVLQRISLVYLL HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH AAIAILNLSRKQLYGLATTLLIGYWIAMQLIPVPGYGLGNLSPEGNFAAYIDRLILTQQH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH LWAGKQYDPEGLFSTLPAIVTVLIGYLTGEWLKHQSTNSRTTLNMVISGLSCLVVGYLWG HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH LFFPINKALWTSSYVIFTAGWALLFLAICYQAMEVRGWHKWGHPFEVMGLNAIFIFIGSG HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEEHHHHEEEEECCCH FLARVMIYNNINRAENSPTIKIWIYEHFFQSWAGSFNGSLLFAIVNLLFWWKISDLMYRR HHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH SLFIKV HHHCCC >Mature Secondary Structure MRLKSLDVFRGITIASMIIVNNPGSWNHVYPPLLHAKWHGCTPTDLIFPFFLFIMGVAMT CCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH FSLSKYTDKNQPIPHIYQRIFRRCLIIFLFGLLLNGFPNYNLATIRVMGVLQRISLVYLL HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH AAIAILNLSRKQLYGLATTLLIGYWIAMQLIPVPGYGLGNLSPEGNFAAYIDRLILTQQH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH LWAGKQYDPEGLFSTLPAIVTVLIGYLTGEWLKHQSTNSRTTLNMVISGLSCLVVGYLWG HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH LFFPINKALWTSSYVIFTAGWALLFLAICYQAMEVRGWHKWGHPFEVMGLNAIFIFIGSG HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEEHHHHEEEEECCCH FLARVMIYNNINRAENSPTIKIWIYEHFFQSWAGSFNGSLLFAIVNLLFWWKISDLMYRR HHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH SLFIKV HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA