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The map label for this gene is zam [H]

Identifier: 113475208

GI number: 113475208

Start: 2294607

End: 2296907

Strand: Reverse

Name: zam [H]

Synonym: Tery_1511

Alternate gene names: 113475208

Gene position: 2296907-2294607 (Counterclockwise)

Preceding gene: 113475211

Following gene: 113475207

Centisome position: 29.64

GC content: 39.11

Gene sequence:

>2301_bases
ATGAAATTTTCCATCGCTACACTCTTAGCAAATTTCAGTGATGACAAATTAATCGCTCCCAAAGCAGTGGAGAAAAAACT
AGATTGTCAAGACGACCAAAGTATCAGAAAATTACAAATTGCCTTGGATGCTCTCGAAAGAATAGGAGTTCTCGCTAAAG
ACAAAGGTCGCTATCGGCGACTTTTTGAAGAGGCACTTGTAGAAGCAAAACTACGTTGCTCTAGTAAAGGATTTTGCTTC
GCGATACAAGACTTAGAAGGAACAGAAGATATTTACATTCGCGAGAGTCATCTGAGCAATGCTTGGAATGGCGATCGCGT
CTTTGTGAAAATTATCAAAGAAGGAAGTCGTCGCCGGAGTCCGGAAGGAGAAGTCAAGCTAATATTAGAACGTGCAAACC
CTTCCTTATTAGCAAGAATCAAGCAAATAAATGGGCAGAATGGAGACCCCTACTATAGAGCAGTTCCCCTAGATGATCGC
TTACTATTTGAACTTGACTTAGTACCAGAAGGTCCAGACTTAGCAGATGCTATAGACCACCTAGTCCATGTTGAAGTATT
GCGCTACCCCCTAGGAGAAAAACGTCCCATTGGAAAAGTAGTTCAGATTCTTGGTTCAGATGCAGAAGCAGCAGATGACT
TAGACATAGTATGTTGTAAACATGATTTACCCCGGTCTTTTCCAAATACAGTTCTTAAAGAAGCGGAGTCTCTAGTCAGC
CACTCTACCAAAGCAGATCAAAAAAATAGACTAGATTTGCGTGAACTGCTCACAGTTTCTTTTGGAGAACTAGAAAAAAA
AGATATTAACCATGCTCTGAGTATAGAAACCACAACCTCCGGTTATTGGCGAGTAGGAGTTCACATTGCTGATGTAGCCT
ATTTTATTAAAGTAGATTCCCCCCTAGATAAAGAAGCTCGTAAGCGAGCTATCAGCATATACCTGCGAAATGAAGTAGTT
CCTATATTGCCAGACGGACTATCAAGTGATTACTTTTCCTTACTACCAAAAAAAGATCGACTAGCTATATCTATTTTGAT
AACTGTCAATAAAAACGGTCAGATAGTTGAGTTTGAGATTGAACCTAGTGTGATCCAGGTAAATGTTCATCTCAGCTACG
AGCAAACCAAAAAAATTATTAATGGCAATACGGATGGATTAGTTGACATTAACTTAGAGCAACTGGAAAATACCATCAAT
AAGCTTCAAGATGTTAGTCACGCAGTCCGAAATGCCAGATTACGAAGAGGTGCTTTTGACCTAAATTTACCAGATGAAAA
AAGCTACTACAACGATGAGAGTCCTTTGGGAGCAATGATAATTCCTAATATCTTTCAAGCTCGTTCCATGGTAGCAGAAT
TGATCGTTCTGGCCAACCAAGCAATAGCTAGTCACTTGTTAGCATTAGGAGTACCTGCAATTTATAGAGTCCAAAATTCC
CCAGAACCAGGAGATATTCAAGAATTTATTAAACTAGCTAGTCATCTTGGATCTGAGTTATATCTAGAAGATGAAGAATA
CCTACAACCTGCTGACTATCAAGCATTTGTTGAGGAATTTACCACATCAAAATCAGAAAGAGTACTGACATACTTGCTCG
AAGATACTTTGAAACCTGCAATTTACAGTACCACAGCTCAACCTCATTTTGGATTAGCTTTACAACATGGTTATGTTCAT
TGTACATCTCCAATTTCAAGATATTCCGATTTATTGATTTCACGAGTATTACATACTGTATTTAATGAGGGTCGCGATCG
CCGTTCTAGTCGTTCTAAAGAAGGTGTAGAGCTGGGACATTCTTCATGTCATGGCAAAATCTCCTGGAATGTTCTAGCTC
CAGAAATACAGCAAGAATTGGAAGCACAATTAACTTCAGTAGTCGTCCATTTAACGGAACGAGAAAACATAGCACAAGAT
GGCCAAGAAGATTTAGAAGGATTAATTAAAACTGGATTAATGAAAGAACGTACTGGTCAAACTTTCCCAGGTTTAATTAC
TGGGGTACAGTCTTACGGTTTCTTTGTAGAAATTGAAATTTCCTCTGAGTCTACACAAACTTTCAGAGTAGAGGGTTTAG
TTCATGTATCTTCTCTGAAAGATGATTGGTATGAATATCGTTCCCGACAACAAACACTTGTTGGACGCAAAAATCGTAAC
CAGTATCGATTAGGGGATATAGTAGAAGTACAGGTCAAGAGTGTTGATTATTACCGCCAGCAAATTGACTTAGTTGCAGT
TAGTGGGGGCAGTACTGCTTTTGACGATGAAGAGTTCTCCTCTAATCCTTATCGGTTCTAA

Upstream 100 bases:

>100_bases
ATGAACGCAACTAAGCTACTAACTTGAGGAAACTTGGGTGAAACCTTAATGACATACTAACTTTAAAAATAGTAGAATCA
GAAAAAGGATAAAACGCTAC

Downstream 100 bases:

>100_bases
TAATATAGATTTCTGATAAGTACATATATTGATGGTTTTTGGAGTAAGGATATGAGTCTGATTATTGTAACTTTTTAGGC
ATAAACTTAATGACAGCAAA

Product: RNAse R

Products: tetrahydrofolate; N-formylmethionyl-tRNA(fMet)

Alternate protein names: NA

Number of amino acids: Translated: 766; Mature: 766

Protein sequence:

>766_residues
MKFSIATLLANFSDDKLIAPKAVEKKLDCQDDQSIRKLQIALDALERIGVLAKDKGRYRRLFEEALVEAKLRCSSKGFCF
AIQDLEGTEDIYIRESHLSNAWNGDRVFVKIIKEGSRRRSPEGEVKLILERANPSLLARIKQINGQNGDPYYRAVPLDDR
LLFELDLVPEGPDLADAIDHLVHVEVLRYPLGEKRPIGKVVQILGSDAEAADDLDIVCCKHDLPRSFPNTVLKEAESLVS
HSTKADQKNRLDLRELLTVSFGELEKKDINHALSIETTTSGYWRVGVHIADVAYFIKVDSPLDKEARKRAISIYLRNEVV
PILPDGLSSDYFSLLPKKDRLAISILITVNKNGQIVEFEIEPSVIQVNVHLSYEQTKKIINGNTDGLVDINLEQLENTIN
KLQDVSHAVRNARLRRGAFDLNLPDEKSYYNDESPLGAMIIPNIFQARSMVAELIVLANQAIASHLLALGVPAIYRVQNS
PEPGDIQEFIKLASHLGSELYLEDEEYLQPADYQAFVEEFTTSKSERVLTYLLEDTLKPAIYSTTAQPHFGLALQHGYVH
CTSPISRYSDLLISRVLHTVFNEGRDRRSSRSKEGVELGHSSCHGKISWNVLAPEIQQELEAQLTSVVVHLTERENIAQD
GQEDLEGLIKTGLMKERTGQTFPGLITGVQSYGFFVEIEISSESTQTFRVEGLVHVSSLKDDWYEYRSRQQTLVGRKNRN
QYRLGDIVEVQVKSVDYYRQQIDLVAVSGGSTAFDDEEFSSNPYRF

Sequences:

>Translated_766_residues
MKFSIATLLANFSDDKLIAPKAVEKKLDCQDDQSIRKLQIALDALERIGVLAKDKGRYRRLFEEALVEAKLRCSSKGFCF
AIQDLEGTEDIYIRESHLSNAWNGDRVFVKIIKEGSRRRSPEGEVKLILERANPSLLARIKQINGQNGDPYYRAVPLDDR
LLFELDLVPEGPDLADAIDHLVHVEVLRYPLGEKRPIGKVVQILGSDAEAADDLDIVCCKHDLPRSFPNTVLKEAESLVS
HSTKADQKNRLDLRELLTVSFGELEKKDINHALSIETTTSGYWRVGVHIADVAYFIKVDSPLDKEARKRAISIYLRNEVV
PILPDGLSSDYFSLLPKKDRLAISILITVNKNGQIVEFEIEPSVIQVNVHLSYEQTKKIINGNTDGLVDINLEQLENTIN
KLQDVSHAVRNARLRRGAFDLNLPDEKSYYNDESPLGAMIIPNIFQARSMVAELIVLANQAIASHLLALGVPAIYRVQNS
PEPGDIQEFIKLASHLGSELYLEDEEYLQPADYQAFVEEFTTSKSERVLTYLLEDTLKPAIYSTTAQPHFGLALQHGYVH
CTSPISRYSDLLISRVLHTVFNEGRDRRSSRSKEGVELGHSSCHGKISWNVLAPEIQQELEAQLTSVVVHLTERENIAQD
GQEDLEGLIKTGLMKERTGQTFPGLITGVQSYGFFVEIEISSESTQTFRVEGLVHVSSLKDDWYEYRSRQQTLVGRKNRN
QYRLGDIVEVQVKSVDYYRQQIDLVAVSGGSTAFDDEEFSSNPYRF
>Mature_766_residues
MKFSIATLLANFSDDKLIAPKAVEKKLDCQDDQSIRKLQIALDALERIGVLAKDKGRYRRLFEEALVEAKLRCSSKGFCF
AIQDLEGTEDIYIRESHLSNAWNGDRVFVKIIKEGSRRRSPEGEVKLILERANPSLLARIKQINGQNGDPYYRAVPLDDR
LLFELDLVPEGPDLADAIDHLVHVEVLRYPLGEKRPIGKVVQILGSDAEAADDLDIVCCKHDLPRSFPNTVLKEAESLVS
HSTKADQKNRLDLRELLTVSFGELEKKDINHALSIETTTSGYWRVGVHIADVAYFIKVDSPLDKEARKRAISIYLRNEVV
PILPDGLSSDYFSLLPKKDRLAISILITVNKNGQIVEFEIEPSVIQVNVHLSYEQTKKIINGNTDGLVDINLEQLENTIN
KLQDVSHAVRNARLRRGAFDLNLPDEKSYYNDESPLGAMIIPNIFQARSMVAELIVLANQAIASHLLALGVPAIYRVQNS
PEPGDIQEFIKLASHLGSELYLEDEEYLQPADYQAFVEEFTTSKSERVLTYLLEDTLKPAIYSTTAQPHFGLALQHGYVH
CTSPISRYSDLLISRVLHTVFNEGRDRRSSRSKEGVELGHSSCHGKISWNVLAPEIQQELEAQLTSVVVHLTERENIAQD
GQEDLEGLIKTGLMKERTGQTFPGLITGVQSYGFFVEIEISSESTQTFRVEGLVHVSSLKDDWYEYRSRQQTLVGRKNRN
QYRLGDIVEVQVKSVDYYRQQIDLVAVSGGSTAFDDEEFSSNPYRF

Specific function: Not known; control resistance to the carbonic anhydrase inhibitor acetazolamide [H]

COG id: COG0557

COG function: function code K; Exoribonuclease R

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI190014625, Length=398, Percent_Identity=29.1457286432161, Blast_Score=147, Evalue=3e-35,
Organism=Homo sapiens, GI190014623, Length=398, Percent_Identity=29.1457286432161, Blast_Score=147, Evalue=3e-35,
Organism=Homo sapiens, GI134288890, Length=375, Percent_Identity=27.7333333333333, Blast_Score=132, Evalue=1e-30,
Organism=Homo sapiens, GI19115966, Length=362, Percent_Identity=28.4530386740331, Blast_Score=122, Evalue=9e-28,
Organism=Homo sapiens, GI219521928, Length=362, Percent_Identity=28.4530386740331, Blast_Score=122, Evalue=1e-27,
Organism=Homo sapiens, GI156105695, Length=456, Percent_Identity=24.3421052631579, Blast_Score=94, Evalue=7e-19,
Organism=Homo sapiens, GI156105693, Length=456, Percent_Identity=24.3421052631579, Blast_Score=93, Evalue=8e-19,
Organism=Escherichia coli, GI87082383, Length=731, Percent_Identity=27.0861833105335, Blast_Score=272, Evalue=7e-74,
Organism=Escherichia coli, GI1787542, Length=541, Percent_Identity=24.3992606284658, Blast_Score=89, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI212645896, Length=416, Percent_Identity=27.8846153846154, Blast_Score=123, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17553506, Length=443, Percent_Identity=27.0880361173815, Blast_Score=115, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6324552, Length=595, Percent_Identity=25.7142857142857, Blast_Score=133, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24649634, Length=407, Percent_Identity=27.027027027027, Blast_Score=138, Evalue=2e-32,
Organism=Drosophila melanogaster, GI19922976, Length=357, Percent_Identity=28.0112044817927, Blast_Score=127, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24654597, Length=357, Percent_Identity=28.0112044817927, Blast_Score=127, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24654592, Length=357, Percent_Identity=28.0112044817927, Blast_Score=126, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011129
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR013223
- InterPro:   IPR001900
- InterPro:   IPR022966
- InterPro:   IPR011805 [H]

Pfam domain/function: PF08206 OB_RNB; PF00773 RNB; PF00575 S1 [H]

EC number: 2.1.2.9

Molecular weight: Translated: 86372; Mature: 86372

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFSIATLLANFSDDKLIAPKAVEKKLDCQDDQSIRKLQIALDALERIGVLAKDKGRYRR
CCEEHHHHHHCCCCCCEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
LFEEALVEAKLRCSSKGFCFAIQDLEGTEDIYIRESHLSNAWNGDRVFVKIIKEGSRRRS
HHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEHHHCCCCCCCCCEEEEEEHHCCCCCC
PEGEVKLILERANPSLLARIKQINGQNGDPYYRAVPLDDRLLFELDLVPEGPDLADAIDH
CCCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHH
LVHVEVLRYPLGEKRPIGKVVQILGSDAEAADDLDIVCCKHDLPRSFPNTVLKEAESLVS
HHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
HSTKADQKNRLDLRELLTVSFGELEKKDINHALSIETTTSGYWRVGVHIADVAYFIKVDS
CCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCEEEEEEECCCEEEEEEEEEEEEEEEEECC
PLDKEARKRAISIYLRNEVVPILPDGLSSDYFSLLPKKDRLAISILITVNKNGQIVEFEI
CCCHHHHHHEEEEEEECCCCEECCCCCCCHHHHHCCCCCCEEEEEEEEECCCCCEEEEEE
EPSVIQVNVHLSYEQTKKIINGNTDGLVDINLEQLENTINKLQDVSHAVRNARLRRGAFD
CCCEEEEEEEECHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEC
LNLPDEKSYYNDESPLGAMIIPNIFQARSMVAELIVLANQAIASHLLALGVPAIYRVQNS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
PEPGDIQEFIKLASHLGSELYLEDEEYLQPADYQAFVEEFTTSKSERVLTYLLEDTLKPA
CCCCCHHHHHHHHHHCCCEEEECCHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCC
IYSTTAQPHFGLALQHGYVHCTSPISRYSDLLISRVLHTVFNEGRDRRSSRSKEGVELGH
CEECCCCCCCCEEEECCEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHCC
SSCHGKISWNVLAPEIQQELEAQLTSVVVHLTERENIAQDGQEDLEGLIKTGLMKERTGQ
CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHCCHHHCCCC
TFPGLITGVQSYGFFVEIEISSESTQTFRVEGLVHVSSLKDDWYEYRSRQQTLVGRKNRN
CCCHHHHHHHHCCEEEEEEECCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCC
QYRLGDIVEVQVKSVDYYRQQIDLVAVSGGSTAFDDEEFSSNPYRF
CEECCCEEEEEEHHHHHHHHCEEEEEECCCCCCCCCHHCCCCCCCC
>Mature Secondary Structure
MKFSIATLLANFSDDKLIAPKAVEKKLDCQDDQSIRKLQIALDALERIGVLAKDKGRYRR
CCEEHHHHHHCCCCCCEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
LFEEALVEAKLRCSSKGFCFAIQDLEGTEDIYIRESHLSNAWNGDRVFVKIIKEGSRRRS
HHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEHHHCCCCCCCCCEEEEEEHHCCCCCC
PEGEVKLILERANPSLLARIKQINGQNGDPYYRAVPLDDRLLFELDLVPEGPDLADAIDH
CCCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHH
LVHVEVLRYPLGEKRPIGKVVQILGSDAEAADDLDIVCCKHDLPRSFPNTVLKEAESLVS
HHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
HSTKADQKNRLDLRELLTVSFGELEKKDINHALSIETTTSGYWRVGVHIADVAYFIKVDS
CCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCEEEEEEECCCEEEEEEEEEEEEEEEEECC
PLDKEARKRAISIYLRNEVVPILPDGLSSDYFSLLPKKDRLAISILITVNKNGQIVEFEI
CCCHHHHHHEEEEEEECCCCEECCCCCCCHHHHHCCCCCCEEEEEEEEECCCCCEEEEEE
EPSVIQVNVHLSYEQTKKIINGNTDGLVDINLEQLENTINKLQDVSHAVRNARLRRGAFD
CCCEEEEEEEECHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEC
LNLPDEKSYYNDESPLGAMIIPNIFQARSMVAELIVLANQAIASHLLALGVPAIYRVQNS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
PEPGDIQEFIKLASHLGSELYLEDEEYLQPADYQAFVEEFTTSKSERVLTYLLEDTLKPA
CCCCCHHHHHHHHHHCCCEEEECCHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCC
IYSTTAQPHFGLALQHGYVHCTSPISRYSDLLISRVLHTVFNEGRDRRSSRSKEGVELGH
CEECCCCCCCCEEEECCEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHCC
SSCHGKISWNVLAPEIQQELEAQLTSVVVHLTERENIAQDGQEDLEGLIKTGLMKERTGQ
CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHCCHHHCCCC
TFPGLITGVQSYGFFVEIEISSESTQTFRVEGLVHVSSLKDDWYEYRSRQQTLVGRKNRN
CCCHHHHHHHHCCEEEEEEECCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCC
QYRLGDIVEVQVKSVDYYRQQIDLVAVSGGSTAFDDEEFSSNPYRF
CEECCCEEEEEEHHHHHHHHCEEEEEECCCCCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 10-formyltetrahydrofolate; L-methionyl-tRNA(fMet); H2O

Specific reaction: 10-formyltetrahydrofolate + L-methionyl-tRNA(fMet) + H2O = tetrahydrofolate + N-formylmethionyl-tRNA(fMet)

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7727754; 8905231 [H]