| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475187
Identifier: 113475187
GI number: 113475187
Start: 2258640
End: 2260478
Strand: Reverse
Name: 113475187
Synonym: Tery_1487
Alternate gene names: NA
Gene position: 2260478-2258640 (Counterclockwise)
Preceding gene: 113475188
Following gene: 113475186
Centisome position: 29.17
GC content: 35.13
Gene sequence:
>1839_bases ATGGGAATGAATGTATTTGTATTATGTACGCCTAGGTCTAGTTCTTACACTTTTGCTAAAGCTTGCACCTATATATCTAA TTATAGAGTAGCCCATGAATCAAACAGTGGATTGTTAGGAAAAAAAAGGGTAGTATATCCAGAAAATCATATAGAAGTAG ATAATCGTTTGGCTTGGTTTTTGGGTTATTTAGATGAGCTATATGGAGATAATGCTTTTTACGTTCATTTAATTAGAAAT AAACAGAAAACTGCTATTAGTATTAACAAGCGATGGAATTTGCCAGCAAGTATTATTAATGCTTATGGACGAGCTATTTT AGTGAGAGGCGATCGCCAACTTGAGAATGACCTAGAAGTTTGTGAAGATTATTATGAGACAGTAACAAAAAATATTCAAT TATTTTTGAAAGACAAATCTCACAAAATTGTATTTAAGGTCGAAAATGCTCAAGAAAATTTTAGAGAGTTTTGGCAAAAA ATAGGTGCTAAAGGTAATTTAGAATTAGCTTTAGAAACCTGGGATAGAAAACACAATGCTTCCCCCAAAAATCAAGATAG TATTCAAGTAAGGAAAATGAAAGAAAAAGCTTTAGTAGAAATTAGTAATGTGAGCTTTGGGGCAAATTTTCCAGAGTTTA TCCAACAAGAATTTAGAGGATGTAATATAGATTCACTAAAAAAAGGAGACCGTTTGAATACCTATTTTCTACCTATAATA GGTTGGGTTCTAGGCCAAAAGTATCAGGTAGTTACAGTAGAAGTAGTCAGTGAGGGTATAGTTGTAGAAACAGTCCCAGT GGATATAGCTCGTCCAGGAGTAAGCAAACAATTCCCCGAAATACCAGCAGCTAAAAATAGTGGTTTTAGCATCAGGGTAG GACTACTGGGTCTGCCAATGGCATCTGAACTAACTTTACAAGCAGTTCTGGAAAATGGTAGTCGCTTTCCCTTGGGAAAT ATCAAATTTCGACGCTTGCAGGGGTTAAAGTCTTGGTACAGTCCAAAGATACAACCTCTGGCTATATCATCTATTGGACC TTCGGGTGCCGAACAGCTATTGCAACTTTTGGTGGGACATCCATCTCTGGTAGGAATAAGTGAGTCAACTAATGATACTC CACCTAGTTATTATTGGTTAAAGTTGTTGGCTGAGTTATCGTCAGAAAATGGAATTTTTGATGCTAGTACTCAGAGAAAT TTGAGGAGCAAGGAACAACGGTTCAAACTATCAAACTTATCTTTTTGGAGAGAGCAAACTTATCCAGAAAATTTAGGAAG CTTCTGTCTGGAAAGTATTGATGGTTTCTATTCAAATGTTCAAGCTGAAGCATCAGAAATTACTTATTTTGTAGAAAGAT ATGATATTTCCCGTCCTAAATTTTTAAATCTTTTATCCGAATTATATCCAGAGGGTAAGGAAATTATTTTGGTTCGTGAT TTTCGAGATGTAGTTTACTCTATGCTACCTTTTAGCGGGCGTAAATGTGCGGGTTTTGATTCAAAAAAATTTAAGAGTTA TCAACAGTTTGTCTATCATTTTGGCAAATATTCTGTTGGTAGTTTACTTGCCAGATGGAAGGAGCGATCGCCTCACATTT ATTTTGTAAAATACGAGGATTTAATTTTATCTCCAGAACCAACTTTAAGGGGGATTTTGGAATATTTAAGTGTTAATAGT TCTCAGGAAGTTATTAATACTATGTTGAAAAAAATAACAAAAAATAACTCGAAACCAGAGGCATTACTGGGAGACTGGCA GTATGAAATGCCAGCTTCTTTGCAAGTTTTATGTAGCGAAGTATGCGAAGCAGCTTTGCAAGAATTTGGTTATAGCTAA
Upstream 100 bases:
>100_bases TACCCCCCCCTTTTTTTAAGATGGGGATATTATTCTTGAGAACTGAATGTTTAGGAGTAAATTTTATTTTTTAGCTTGAC AAATGAAGAGGAAAAAAATT
Downstream 100 bases:
>100_bases GTTAATTAATGGATAAAGGAAATATAGTATAGTAATAATTTTGATATTTGGTATGATCAGGAGCAGAATAAATTAATGGT AATTAGTTCTAATTTCAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 612; Mature: 611
Protein sequence:
>612_residues MGMNVFVLCTPRSSSYTFAKACTYISNYRVAHESNSGLLGKKRVVYPENHIEVDNRLAWFLGYLDELYGDNAFYVHLIRN KQKTAISINKRWNLPASIINAYGRAILVRGDRQLENDLEVCEDYYETVTKNIQLFLKDKSHKIVFKVENAQENFREFWQK IGAKGNLELALETWDRKHNASPKNQDSIQVRKMKEKALVEISNVSFGANFPEFIQQEFRGCNIDSLKKGDRLNTYFLPII GWVLGQKYQVVTVEVVSEGIVVETVPVDIARPGVSKQFPEIPAAKNSGFSIRVGLLGLPMASELTLQAVLENGSRFPLGN IKFRRLQGLKSWYSPKIQPLAISSIGPSGAEQLLQLLVGHPSLVGISESTNDTPPSYYWLKLLAELSSENGIFDASTQRN LRSKEQRFKLSNLSFWREQTYPENLGSFCLESIDGFYSNVQAEASEITYFVERYDISRPKFLNLLSELYPEGKEIILVRD FRDVVYSMLPFSGRKCAGFDSKKFKSYQQFVYHFGKYSVGSLLARWKERSPHIYFVKYEDLILSPEPTLRGILEYLSVNS SQEVINTMLKKITKNNSKPEALLGDWQYEMPASLQVLCSEVCEAALQEFGYS
Sequences:
>Translated_612_residues MGMNVFVLCTPRSSSYTFAKACTYISNYRVAHESNSGLLGKKRVVYPENHIEVDNRLAWFLGYLDELYGDNAFYVHLIRN KQKTAISINKRWNLPASIINAYGRAILVRGDRQLENDLEVCEDYYETVTKNIQLFLKDKSHKIVFKVENAQENFREFWQK IGAKGNLELALETWDRKHNASPKNQDSIQVRKMKEKALVEISNVSFGANFPEFIQQEFRGCNIDSLKKGDRLNTYFLPII GWVLGQKYQVVTVEVVSEGIVVETVPVDIARPGVSKQFPEIPAAKNSGFSIRVGLLGLPMASELTLQAVLENGSRFPLGN IKFRRLQGLKSWYSPKIQPLAISSIGPSGAEQLLQLLVGHPSLVGISESTNDTPPSYYWLKLLAELSSENGIFDASTQRN LRSKEQRFKLSNLSFWREQTYPENLGSFCLESIDGFYSNVQAEASEITYFVERYDISRPKFLNLLSELYPEGKEIILVRD FRDVVYSMLPFSGRKCAGFDSKKFKSYQQFVYHFGKYSVGSLLARWKERSPHIYFVKYEDLILSPEPTLRGILEYLSVNS SQEVINTMLKKITKNNSKPEALLGDWQYEMPASLQVLCSEVCEAALQEFGYS >Mature_611_residues GMNVFVLCTPRSSSYTFAKACTYISNYRVAHESNSGLLGKKRVVYPENHIEVDNRLAWFLGYLDELYGDNAFYVHLIRNK QKTAISINKRWNLPASIINAYGRAILVRGDRQLENDLEVCEDYYETVTKNIQLFLKDKSHKIVFKVENAQENFREFWQKI GAKGNLELALETWDRKHNASPKNQDSIQVRKMKEKALVEISNVSFGANFPEFIQQEFRGCNIDSLKKGDRLNTYFLPIIG WVLGQKYQVVTVEVVSEGIVVETVPVDIARPGVSKQFPEIPAAKNSGFSIRVGLLGLPMASELTLQAVLENGSRFPLGNI KFRRLQGLKSWYSPKIQPLAISSIGPSGAEQLLQLLVGHPSLVGISESTNDTPPSYYWLKLLAELSSENGIFDASTQRNL RSKEQRFKLSNLSFWREQTYPENLGSFCLESIDGFYSNVQAEASEITYFVERYDISRPKFLNLLSELYPEGKEIILVRDF RDVVYSMLPFSGRKCAGFDSKKFKSYQQFVYHFGKYSVGSLLARWKERSPHIYFVKYEDLILSPEPTLRGILEYLSVNSS QEVINTMLKKITKNNSKPEALLGDWQYEMPASLQVLCSEVCEAALQEFGYS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69838; Mature: 69706
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGMNVFVLCTPRSSSYTFAKACTYISNYRVAHESNSGLLGKKRVVYPENHIEVDNRLAWF CCCEEEEEECCCCCCCHHHHHHHHHHCEEEEECCCCCCCCCCEEECCCCCCCHHHHHHHH LGYLDELYGDNAFYVHLIRNKQKTAISINKRWNLPASIINAYGRAILVRGDRQLENDLEV HHHHHHHHCCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHCCCEEEEECCHHHHHHHHH CEDYYETVTKNIQLFLKDKSHKIVFKVENAQENFREFWQKIGAKGNLELALETWDRKHNA HHHHHHHHHHCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC SPKNQDSIQVRKMKEKALVEISNVSFGANFPEFIQQEFRGCNIDSLKKGDRLNTYFLPII CCCCCCCHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCHHHHHH GWVLGQKYQVVTVEVVSEGIVVETVPVDIARPGVSKQFPEIPAAKNSGFSIRVGLLGLPM HHHHCCCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC ASELTLQAVLENGSRFPLGNIKFRRLQGLKSWYSPKIQPLAISSIGPSGAEQLLQLLVGH HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCC PSLVGISESTNDTPPSYYWLKLLAELSSENGIFDASTQRNLRSKEQRFKLSNLSFWREQT CCEEEECCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHCCHHHHHCC YPENLGSFCLESIDGFYSNVQAEASEITYFVERYDISRPKFLNLLSELYPEGKEIILVRD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEC FRDVVYSMLPFSGRKCAGFDSKKFKSYQQFVYHFGKYSVGSLLARWKERSPHIYFVKYED HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEC LILSPEPTLRGILEYLSVNSSQEVINTMLKKITKNNSKPEALLGDWQYEMPASLQVLCSE EEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHH VCEAALQEFGYS HHHHHHHHCCCC >Mature Secondary Structure GMNVFVLCTPRSSSYTFAKACTYISNYRVAHESNSGLLGKKRVVYPENHIEVDNRLAWF CCEEEEEECCCCCCCHHHHHHHHHHCEEEEECCCCCCCCCCEEECCCCCCCHHHHHHHH LGYLDELYGDNAFYVHLIRNKQKTAISINKRWNLPASIINAYGRAILVRGDRQLENDLEV HHHHHHHHCCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHCCCEEEEECCHHHHHHHHH CEDYYETVTKNIQLFLKDKSHKIVFKVENAQENFREFWQKIGAKGNLELALETWDRKHNA HHHHHHHHHHCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC SPKNQDSIQVRKMKEKALVEISNVSFGANFPEFIQQEFRGCNIDSLKKGDRLNTYFLPII CCCCCCCHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCHHHHHH GWVLGQKYQVVTVEVVSEGIVVETVPVDIARPGVSKQFPEIPAAKNSGFSIRVGLLGLPM HHHHCCCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC ASELTLQAVLENGSRFPLGNIKFRRLQGLKSWYSPKIQPLAISSIGPSGAEQLLQLLVGH HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCC PSLVGISESTNDTPPSYYWLKLLAELSSENGIFDASTQRNLRSKEQRFKLSNLSFWREQT CCEEEECCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHCCHHHHHCC YPENLGSFCLESIDGFYSNVQAEASEITYFVERYDISRPKFLNLLSELYPEGKEIILVRD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEC FRDVVYSMLPFSGRKCAGFDSKKFKSYQQFVYHFGKYSVGSLLARWKERSPHIYFVKYED HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEC LILSPEPTLRGILEYLSVNSSQEVINTMLKKITKNNSKPEALLGDWQYEMPASLQVLCSE EEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHH VCEAALQEFGYS HHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA