| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475183
Identifier: 113475183
GI number: 113475183
Start: 2254170
End: 2254688
Strand: Reverse
Name: 113475183
Synonym: Tery_1482
Alternate gene names: NA
Gene position: 2254688-2254170 (Counterclockwise)
Preceding gene: 113475185
Following gene: 113475182
Centisome position: 29.09
GC content: 36.61
Gene sequence:
>519_bases ATGTCTGCTGCTGCTGAGTTTGCCCATAGAATGTGGGGAGCAGAATGGATATTTCCATTTGATGCTGATGAAGTGATGTC TTCATCAGGGAAACCTCTACCAGATATTCTGAGCCAATTGGAACCAGAACACTTTTGTCTTGGTTTACAACATAGGAACC ATGTACTCCGTTCATTTTACGATTTATCTGAAATTAATCCTCTGAAAAGAATGACTCACAGAAAAAAGAAAGATACTAAT ATTCGTAAGGTTATGGTTCGCTGGCAACCTGGTATGGAAATTACTCAAGGGCATCACCTGATCAGGTTGAATGATGAGAA GCTACCTATTACAATACTTGGACAGAATCATGGACTTATACTCAGACAATATAGATATCGTTCTAGAGAACAGATAAAAC AAAAAATTCTGAATGGGGGAAAAGCTTATAATGCAACCTCAGATATATCAAAAAAATATGGTGGCTTCTGGCAAAAACAG TATAGTCAGTACAATATAAAGAGGAGAAAAATTTATTGA
Upstream 100 bases:
>100_bases ATTTTCTATAATAGGTTACTTCTAAAAGTGTAGCTTAAGTTTATGAAATTGGTATTACTTGATTGAAGATCGAGATCCTT TATTTCATAAATTTAGGAAA
Downstream 100 bases:
>100_bases TGAATGTTATGCTTCTGAGATTACTAAAGACTCAGATGCTATTCACGATCCTGCTTGGGTATAATTAGGGTTTGCTGCAA AAGTATTTTTTTAAGGAGTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MSAAAEFAHRMWGAEWIFPFDADEVMSSSGKPLPDILSQLEPEHFCLGLQHRNHVLRSFYDLSEINPLKRMTHRKKKDTN IRKVMVRWQPGMEITQGHHLIRLNDEKLPITILGQNHGLILRQYRYRSREQIKQKILNGGKAYNATSDISKKYGGFWQKQ YSQYNIKRRKIY
Sequences:
>Translated_172_residues MSAAAEFAHRMWGAEWIFPFDADEVMSSSGKPLPDILSQLEPEHFCLGLQHRNHVLRSFYDLSEINPLKRMTHRKKKDTN IRKVMVRWQPGMEITQGHHLIRLNDEKLPITILGQNHGLILRQYRYRSREQIKQKILNGGKAYNATSDISKKYGGFWQKQ YSQYNIKRRKIY >Mature_171_residues SAAAEFAHRMWGAEWIFPFDADEVMSSSGKPLPDILSQLEPEHFCLGLQHRNHVLRSFYDLSEINPLKRMTHRKKKDTNI RKVMVRWQPGMEITQGHHLIRLNDEKLPITILGQNHGLILRQYRYRSREQIKQKILNGGKAYNATSDISKKYGGFWQKQY SQYNIKRRKIY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20356; Mature: 20225
Theoretical pI: Translated: 10.51; Mature: 10.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAAAEFAHRMWGAEWIFPFDADEVMSSSGKPLPDILSQLEPEHFCLGLQHRNHVLRSFY CCHHHHHHHHHCCCCEECCCCHHHHHHCCCCCHHHHHHHCCHHHHEECHHHHHHHHHHHH DLSEINPLKRMTHRKKKDTNIRKVMVRWQPGMEITQGHHLIRLNDEKLPITILGQNHGLI HHHHCCHHHHHHHHHCCCCHHHEEEEEECCCCEECCCCEEEEECCCCCCEEEEECCCCEE LRQYRYRSREQIKQKILNGGKAYNATSDISKKYGGFWQKQYSQYNIKRRKIY HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHCCHHHCCC >Mature Secondary Structure SAAAEFAHRMWGAEWIFPFDADEVMSSSGKPLPDILSQLEPEHFCLGLQHRNHVLRSFY CHHHHHHHHHCCCCEECCCCHHHHHHCCCCCHHHHHHHCCHHHHEECHHHHHHHHHHHH DLSEINPLKRMTHRKKKDTNIRKVMVRWQPGMEITQGHHLIRLNDEKLPITILGQNHGLI HHHHCCHHHHHHHHHCCCCHHHEEEEEECCCCEECCCCEEEEECCCCCCEEEEECCCCEE LRQYRYRSREQIKQKILNGGKAYNATSDISKKYGGFWQKQYSQYNIKRRKIY HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA