| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475168
Identifier: 113475168
GI number: 113475168
Start: 2225569
End: 2226135
Strand: Reverse
Name: 113475168
Synonym: Tery_1466
Alternate gene names: NA
Gene position: 2226135-2225569 (Counterclockwise)
Preceding gene: 113475169
Following gene: 113475167
Centisome position: 28.72
GC content: 32.8
Gene sequence:
>567_bases ATGTCAAATCTCACAGTTAAAGACTTAGAAATACTGCAAGATACTCTTAATCAAGTAGGTTTAGATTATCAATTAGAATT GGATGAAGGAAAAATATTAGTGATGGGTCCGTCAGATATTATTTCTAGTGAAGTTGGCGTTCAATTAATTAGACTATTAG GCAGTTGGGTTTACCCACGTCGTCTCGGACGTTTGTTTGATTCTAGTGGTGCTTTTATCCTTCCAGATACTAACTTGAAA GTTCCTGATGTTTCTTTTGTTCGTGCACAACGTTTGAAAAAAAGTGTTCGTTATTTTGGGGAATTAACCCCAGATTTAGT AGTAGAAATTAAGTCTCAAAGTGATAGAATTAAATCTCTAAAACAGAAAATAAAAAAATATTTAGAACTAGGGGCGCAAG TAGGAATATTGATAGACCCTGATGAAGAAATAGTTATAGTTTATCGTTCTAATGGTGAAGAAATTGAGTTAAAAAATGGA GATATTTTGACTATTCCTGAATTATTTGGTGAGTGGGAATTATCTATTTTTGAACTTTGGCCACCTGTGTTTGATGAAGA TGAATAA
Upstream 100 bases:
>100_bases ATAATTCTTTTGCCAAAATTATAATTATTAATAGGGAATAGAGAACAATTCTCTATTCCTTTTTATATTTTTTTAATCCT TAACTAACCCTATAAATTAT
Downstream 100 bases:
>100_bases GTTTTACTATAGAGTTTCCCAAGTTAATAATACTATTTCACGGCATACATTCAAAAGTTAAAAGTTAAAAGTTAAAAGTT AAAAGTTAAAAGTTAAAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MSNLTVKDLEILQDTLNQVGLDYQLELDEGKILVMGPSDIISSEVGVQLIRLLGSWVYPRRLGRLFDSSGAFILPDTNLK VPDVSFVRAQRLKKSVRYFGELTPDLVVEIKSQSDRIKSLKQKIKKYLELGAQVGILIDPDEEIVIVYRSNGEEIELKNG DILTIPELFGEWELSIFELWPPVFDEDE
Sequences:
>Translated_188_residues MSNLTVKDLEILQDTLNQVGLDYQLELDEGKILVMGPSDIISSEVGVQLIRLLGSWVYPRRLGRLFDSSGAFILPDTNLK VPDVSFVRAQRLKKSVRYFGELTPDLVVEIKSQSDRIKSLKQKIKKYLELGAQVGILIDPDEEIVIVYRSNGEEIELKNG DILTIPELFGEWELSIFELWPPVFDEDE >Mature_187_residues SNLTVKDLEILQDTLNQVGLDYQLELDEGKILVMGPSDIISSEVGVQLIRLLGSWVYPRRLGRLFDSSGAFILPDTNLKV PDVSFVRAQRLKKSVRYFGELTPDLVVEIKSQSDRIKSLKQKIKKYLELGAQVGILIDPDEEIVIVYRSNGEEIELKNGD ILTIPELFGEWELSIFELWPPVFDEDE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21394; Mature: 21263
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNLTVKDLEILQDTLNQVGLDYQLELDEGKILVMGPSDIISSEVGVQLIRLLGSWVYPR CCCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHCCCCHH RLGRLFDSSGAFILPDTNLKVPDVSFVRAQRLKKSVRYFGELTPDLVVEIKSQSDRIKSL HHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHEEEECCCHHHHHHH KQKIKKYLELGAQVGILIDPDEEIVIVYRSNGEEIELKNGDILTIPELFGEWELSIFELW HHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCEEEECCCCEEEHHHHCCCCCEEEEECC PPVFDEDE CCCCCCCC >Mature Secondary Structure SNLTVKDLEILQDTLNQVGLDYQLELDEGKILVMGPSDIISSEVGVQLIRLLGSWVYPR CCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHCCCCHH RLGRLFDSSGAFILPDTNLKVPDVSFVRAQRLKKSVRYFGELTPDLVVEIKSQSDRIKSL HHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHEEEECCCHHHHHHH KQKIKKYLELGAQVGILIDPDEEIVIVYRSNGEEIELKNGDILTIPELFGEWELSIFELW HHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCEEEECCCCEEEHHHHCCCCCEEEEECC PPVFDEDE CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA