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The map label for this gene is yjcF [C]

Identifier: 113475153

GI number: 113475153

Start: 2191817

End: 2193394

Strand: Reverse

Name: yjcF [C]

Synonym: Tery_1451

Alternate gene names: 113475153

Gene position: 2193394-2191817 (Counterclockwise)

Preceding gene: 113475154

Following gene: 113475152

Centisome position: 28.3

GC content: 37.45

Gene sequence:

>1578_bases
ATGGCTAATCTTACCCTTAGTCCTTGTCAATCTTTATCTTTCACTCAAGGCTCACTTAAGGTTAATAAATATTCAATGGA
TCTCTCCTATTCAAATTTAACAGGAGCAAATCTCTCAGGTGCTAATCTTGCCGGAATTAATTTACAGGGGAGTAATCTTC
AAGGTGCAAACTTGGTAAATGCTAATTTAGAAGGTGCGAATTTAAAGGACGTCAATTTAGAAGGTGCTAATTTAGCACGC
GCTAACTTAAAGAAAGCCATACTTCAAAATAGTAATTTAGATAATAGTAATTTGTATGGATCTGACCTTCAAGCAGCTGA
TTTCTCTGAAGCTAATCTCGTCAATATGAAAGCTTTATGGGCTAATTTTCATAATGCTATTTTCCATCGGGCAAACTTAG
AATCAGCGAATTTTAATCGAGCAAATTTAAGAGGGGCTGATTTTTATAAAGCTAATCTAGAGAATGCCTCCTTGCGTTTT
ACCGATTTTGGTAGCACGACTAACGTGATCGAAGCTAAATTAAACCCCACTAATTTCCGAGAAACTCAGTTAAAAGGTGC
TGATCTGTGGGGAGCAAAAATGTGGTCAATATTTCAAATTAAACAGGCTAAAAATTGGCAGGAAACCAATAGGATGCCTA
ATTGGGAACAGCAAATCAAACAAGCACGCTTACCCCGTTTAAGGATAGCTTTGCTCAAACCAGAAAATGCTGACAGTATT
TCTGATACCTATGAATTTGGGATGCGTCGTGCTGCTAACCGTCGTGTGGAAATTTGGGGTATTTCTTATCCCGGTGGTGT
GAAGAACGAAGCGAAAATAATTAGGCAGTTGATTAAGGATGGCATGGATGGGATTATCTTAACGCCTGAAGATCCTGTTC
AGTCCCTTGATGCCCTGAAACTGGCAAGGGATGCTGGAGTAGCTATTACCACTGTTGATTTCTGCTTTAATCCTATAGAT
GCAGAAGATTTAGCTATTGCTTGCTATAATACAAATAGTTTTCAAATGGGCTATGATTCAGGCCAATATATAGCAGAATG
GGCTCAAAAGAATTTACAGTCAAAATCGGTTCAAATTGGTTTAGTTGATGGTGCTGTATATGATCGCTACTATCCCTATC
TTCAAGGAGTCTTAAAAGCGATCAACCATTCGGGTATCCCTTTTCAAATTGTTGACTCTGTTAGCATTGCTTTTGGTAGT
GATATTATAAAAGTTAAAAAACTACTTGAAGATAATCCTGATGTTCAGATACTTTGGGGGGGATCAAATATAGCAACGGA
GGTTACAGTTGCAGCAGTAGCAGAATCTGCCTTGAAGAATAAAGTTAAGGTTTTTGGAATTTTAGACCTCTCAAGAAATA
AAGCTACAAAATTACTTAATCCCAATAGTCCTTTACAGTTGATTATTGAGCAGTCTAGTATTCAGATTGGTTATGAGGCT
GTGAAAACAACAATTTCTGTCTTGAGAAAAGAAATAGACGGAGCAGATTATCAGGTTTACCCCGTTAAGCACCGTCTATT
AACTCAAAATGACCCAGACATTGTAAGTGATATACTCAACGACTCAAGTTTAGAATAA

Upstream 100 bases:

>100_bases
GGAATCTAGCTATGAGTATAGTGATAGCAGAATTGCTGCCCTGAAAGTTTTAAATAAAGGCTGCAAAAGTAATCCAGGAT
TAAAAGCAGTTAGTGCGAAT

Downstream 100 bases:

>100_bases
TTTCGGTTTGTTGACATTTGTTTAATAAATGGGAAAAGTGGTCTAATAGTATACTTTTTAACCTATATTTTTTGATTAAG
TCAATGCTCATGTCGTTCTT

Product: periplasmic binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 524

Protein sequence:

>525_residues
MANLTLSPCQSLSFTQGSLKVNKYSMDLSYSNLTGANLSGANLAGINLQGSNLQGANLVNANLEGANLKDVNLEGANLAR
ANLKKAILQNSNLDNSNLYGSDLQAADFSEANLVNMKALWANFHNAIFHRANLESANFNRANLRGADFYKANLENASLRF
TDFGSTTNVIEAKLNPTNFRETQLKGADLWGAKMWSIFQIKQAKNWQETNRMPNWEQQIKQARLPRLRIALLKPENADSI
SDTYEFGMRRAANRRVEIWGISYPGGVKNEAKIIRQLIKDGMDGIILTPEDPVQSLDALKLARDAGVAITTVDFCFNPID
AEDLAIACYNTNSFQMGYDSGQYIAEWAQKNLQSKSVQIGLVDGAVYDRYYPYLQGVLKAINHSGIPFQIVDSVSIAFGS
DIIKVKKLLEDNPDVQILWGGSNIATEVTVAAVAESALKNKVKVFGILDLSRNKATKLLNPNSPLQLIIEQSSIQIGYEA
VKTTISVLRKEIDGADYQVYPVKHRLLTQNDPDIVSDILNDSSLE

Sequences:

>Translated_525_residues
MANLTLSPCQSLSFTQGSLKVNKYSMDLSYSNLTGANLSGANLAGINLQGSNLQGANLVNANLEGANLKDVNLEGANLAR
ANLKKAILQNSNLDNSNLYGSDLQAADFSEANLVNMKALWANFHNAIFHRANLESANFNRANLRGADFYKANLENASLRF
TDFGSTTNVIEAKLNPTNFRETQLKGADLWGAKMWSIFQIKQAKNWQETNRMPNWEQQIKQARLPRLRIALLKPENADSI
SDTYEFGMRRAANRRVEIWGISYPGGVKNEAKIIRQLIKDGMDGIILTPEDPVQSLDALKLARDAGVAITTVDFCFNPID
AEDLAIACYNTNSFQMGYDSGQYIAEWAQKNLQSKSVQIGLVDGAVYDRYYPYLQGVLKAINHSGIPFQIVDSVSIAFGS
DIIKVKKLLEDNPDVQILWGGSNIATEVTVAAVAESALKNKVKVFGILDLSRNKATKLLNPNSPLQLIIEQSSIQIGYEA
VKTTISVLRKEIDGADYQVYPVKHRLLTQNDPDIVSDILNDSSLE
>Mature_524_residues
ANLTLSPCQSLSFTQGSLKVNKYSMDLSYSNLTGANLSGANLAGINLQGSNLQGANLVNANLEGANLKDVNLEGANLARA
NLKKAILQNSNLDNSNLYGSDLQAADFSEANLVNMKALWANFHNAIFHRANLESANFNRANLRGADFYKANLENASLRFT
DFGSTTNVIEAKLNPTNFRETQLKGADLWGAKMWSIFQIKQAKNWQETNRMPNWEQQIKQARLPRLRIALLKPENADSIS
DTYEFGMRRAANRRVEIWGISYPGGVKNEAKIIRQLIKDGMDGIILTPEDPVQSLDALKLARDAGVAITTVDFCFNPIDA
EDLAIACYNTNSFQMGYDSGQYIAEWAQKNLQSKSVQIGLVDGAVYDRYYPYLQGVLKAINHSGIPFQIVDSVSIAFGSD
IIKVKKLLEDNPDVQILWGGSNIATEVTVAAVAESALKNKVKVFGILDLSRNKATKLLNPNSPLQLIIEQSSIQIGYEAV
KTTISVLRKEIDGADYQVYPVKHRLLTQNDPDIVSDILNDSSLE

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=184, Percent_Identity=32.6086956521739, Blast_Score=72, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221377802, Length=136, Percent_Identity=36.0294117647059, Blast_Score=73, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 57903; Mature: 57772

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLTLSPCQSLSFTQGSLKVNKYSMDLSYSNLTGANLSGANLAGINLQGSNLQGANLVN
CCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCEEEE
ANLEGANLKDVNLEGANLARANLKKAILQNSNLDNSNLYGSDLQAADFSEANLVNMKALW
CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHH
ANFHNAIFHRANLESANFNRANLRGADFYKANLENASLRFTDFGSTTNVIEAKLNPTNFR
HHHHHHHHEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCEEEEECCCCCCC
ETQLKGADLWGAKMWSIFQIKQAKNWQETNRMPNWEQQIKQARLPRLRIALLKPENADSI
HHHCCCCCCCCHHHHHHEEEHHCCCHHHHCCCCCHHHHHHHHCCCEEEEEEECCCCCCCH
SDTYEFGMRRAANRRVEIWGISYPGGVKNEAKIIRQLIKDGMDGIILTPEDPVQSLDALK
HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
LARDAGVAITTVDFCFNPIDAEDLAIACYNTNSFQMGYDSGQYIAEWAQKNLQSKSVQIG
HHHHCCEEEEEEEHHCCCCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHCCCCCCEEEE
LVDGAVYDRYYPYLQGVLKAINHSGIPFQIVDSVSIAFGSDIIKVKKLLEDNPDVQILWG
EECCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCHHHHHHHHHCCCCCEEEEEC
GSNIATEVTVAAVAESALKNKVKVFGILDLSRNKATKLLNPNSPLQLIIEQSSIQIGYEA
CCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCHHEECCCCCCEEEEEECCCCCHHHHH
VKTTISVLRKEIDGADYQVYPVKHRLLTQNDPDIVSDILNDSSLE
HHHHHHHHHHHCCCCCEEEEEEHHEECCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure 
ANLTLSPCQSLSFTQGSLKVNKYSMDLSYSNLTGANLSGANLAGINLQGSNLQGANLVN
CCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCEEEE
ANLEGANLKDVNLEGANLARANLKKAILQNSNLDNSNLYGSDLQAADFSEANLVNMKALW
CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHH
ANFHNAIFHRANLESANFNRANLRGADFYKANLENASLRFTDFGSTTNVIEAKLNPTNFR
HHHHHHHHEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCEEEEECCCCCCC
ETQLKGADLWGAKMWSIFQIKQAKNWQETNRMPNWEQQIKQARLPRLRIALLKPENADSI
HHHCCCCCCCCHHHHHHEEEHHCCCHHHHCCCCCHHHHHHHHCCCEEEEEEECCCCCCCH
SDTYEFGMRRAANRRVEIWGISYPGGVKNEAKIIRQLIKDGMDGIILTPEDPVQSLDALK
HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
LARDAGVAITTVDFCFNPIDAEDLAIACYNTNSFQMGYDSGQYIAEWAQKNLQSKSVQIG
HHHHCCEEEEEEEHHCCCCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHCCCCCCEEEE
LVDGAVYDRYYPYLQGVLKAINHSGIPFQIVDSVSIAFGSDIIKVKKLLEDNPDVQILWG
EECCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCHHHHHHHHHCCCCCEEEEEC
GSNIATEVTVAAVAESALKNKVKVFGILDLSRNKATKLLNPNSPLQLIIEQSSIQIGYEA
CCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCHHEECCCCCCEEEEEECCCCCHHHHH
VKTTISVLRKEIDGADYQVYPVKHRLLTQNDPDIVSDILNDSSLE
HHHHHHHHHHHCCCCCEEEEEEHHEECCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA