| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475154
Identifier: 113475154
GI number: 113475154
Start: 2193828
End: 2195204
Strand: Reverse
Name: 113475154
Synonym: Tery_1452
Alternate gene names: NA
Gene position: 2195204-2193828 (Counterclockwise)
Preceding gene: 113475157
Following gene: 113475153
Centisome position: 28.32
GC content: 33.12
Gene sequence:
>1377_bases ATGTTCCTTGTTTGGAGATATATTTTAGACATGACTTTAGAAAAAAAAACAGATCACCAACGAAATTTAGGTCCCACCAT CTTAGCTGGTTGTATGGGCTTTATGACTATTTTTGCTTGGGCTTGTAGTCCGAACCCTTTTAAACCCCTCACTCTTAATG TTGAATTAACTGAAAATGTAGGTTCAAAAAATTCAGATCATACAATTTCCACAGAAGGAATTACTGAACAAACAATTCGA CTAGGTTCTGTCCTCGCTTTAGAAGGACAAGAAGAGATTTTAGGCAATAGAATGAAATCTGGCTTAGAAGCTGCACTTGA TGGTCAATTAGTACAGGAAAAAAAAATTCAATTAATCTTTAAAAATGATTATTATGAGCCTTTAGTTGCTCGTAAAAAAG CACAAAGGTTGATTAAGTCTGGAATTTTTTTGATGATTGGAAATGTTGGTACACCGACCGCAAAAGAAACATTGCCAATT TTAAAGAAAAACAATGTTCCTGCCGTTGGTTTTTTTACAGGTTCTGAACTTTTGCGTTCGCGATCTGAACTAATCATTAA TTATCGTGCGACTTATGCAGAGGAAATAGAAGCTGTGGTAAAAATCGCTTTAAATGCTGGGGTAAAACCCTATGAAATTT GTGCTTATGTTCAAGATGACAGCTATGGAATGTCAGGATTAAAAGGGCTTATATATGCTTTAGTAAAAGCAGAAGTTGAT CAGAGTATATTACGCCCATATGAAAAAGTTTTAGAGTATAAAGAAAAAGGAAATCAAGGCAATTCTTTACTTGGCCCCAT AGGGTTTTATCCCCGTAATACTCCCTATACAAAGGAAGGTTATAACTCATTAAAACAGTGGGAAAAAAATACGGGAATAA ACTGTAGATTAGTCGTAACAGCAGCAACTTCTACTAATGCTGCACGATTTATTAATGTAGCTAAAAAGGAAGGAGAGCCT TGGGTTATTTCCTCACTATCATTTGCCCATAAAGAAGAATTACAGTTTGATTTAGAAGAATACGGGATCACAGATCAAGT AATTATTACAGAAGTTGTTCCTCAATTAGATTCTGATCTACCTATTGTTCAGGAGGCAAAATCTAAGCTAAATAGTAAGT TTGATCATGTATCTTTAGAAGGATATATTATAGGAAAAATGACTTTAAAAATTCTCAAAGCAATACCAGGAGAAATCAAT CGTGAGAGTTTTTTAAAACAAGCTGCTATGTCAAAGTTTGATTTAGGTGGTGTTGTAATTGATTTTACTAAAGGTCTAAA TAATTCCTCTAATCTAGTTTTAATAAGTATTTTAACTCCTCAAGGATTTAAAGATTTCCATAAATATGATTCAGAAAAAT TGTTCAATAATTATTAA
Upstream 100 bases:
>100_bases ACTAAGGAAAGGAGATCAATGTTTTGGTAGTAGGAGACGATATCGCGGAAACCTTTTTACCTTAGCCGACAAGTAGTTAG GCGATGGAAGTGCAACTTCA
Downstream 100 bases:
>100_bases TTTTTATAGATTAATTTAATAGGAAAAATTACTAATGGATAAAAAAGAAAAAAACTTACCAAAAGAAATGAGTAACTCTG AGTTTATCAATCATGAAAAT
Product: branched-chain amino acid ABC transporter periplasmic protein
Products: NA
Alternate protein names: Lipoprotein; Twin-Arginine Translocation Pathway Signal; Signal Peptide; Serine/Threonine Protein Kinase
Number of amino acids: Translated: 458; Mature: 458
Protein sequence:
>458_residues MFLVWRYILDMTLEKKTDHQRNLGPTILAGCMGFMTIFAWACSPNPFKPLTLNVELTENVGSKNSDHTISTEGITEQTIR LGSVLALEGQEEILGNRMKSGLEAALDGQLVQEKKIQLIFKNDYYEPLVARKKAQRLIKSGIFLMIGNVGTPTAKETLPI LKKNNVPAVGFFTGSELLRSRSELIINYRATYAEEIEAVVKIALNAGVKPYEICAYVQDDSYGMSGLKGLIYALVKAEVD QSILRPYEKVLEYKEKGNQGNSLLGPIGFYPRNTPYTKEGYNSLKQWEKNTGINCRLVVTAATSTNAARFINVAKKEGEP WVISSLSFAHKEELQFDLEEYGITDQVIITEVVPQLDSDLPIVQEAKSKLNSKFDHVSLEGYIIGKMTLKILKAIPGEIN RESFLKQAAMSKFDLGGVVIDFTKGLNNSSNLVLISILTPQGFKDFHKYDSEKLFNNY
Sequences:
>Translated_458_residues MFLVWRYILDMTLEKKTDHQRNLGPTILAGCMGFMTIFAWACSPNPFKPLTLNVELTENVGSKNSDHTISTEGITEQTIR LGSVLALEGQEEILGNRMKSGLEAALDGQLVQEKKIQLIFKNDYYEPLVARKKAQRLIKSGIFLMIGNVGTPTAKETLPI LKKNNVPAVGFFTGSELLRSRSELIINYRATYAEEIEAVVKIALNAGVKPYEICAYVQDDSYGMSGLKGLIYALVKAEVD QSILRPYEKVLEYKEKGNQGNSLLGPIGFYPRNTPYTKEGYNSLKQWEKNTGINCRLVVTAATSTNAARFINVAKKEGEP WVISSLSFAHKEELQFDLEEYGITDQVIITEVVPQLDSDLPIVQEAKSKLNSKFDHVSLEGYIIGKMTLKILKAIPGEIN RESFLKQAAMSKFDLGGVVIDFTKGLNNSSNLVLISILTPQGFKDFHKYDSEKLFNNY >Mature_458_residues MFLVWRYILDMTLEKKTDHQRNLGPTILAGCMGFMTIFAWACSPNPFKPLTLNVELTENVGSKNSDHTISTEGITEQTIR LGSVLALEGQEEILGNRMKSGLEAALDGQLVQEKKIQLIFKNDYYEPLVARKKAQRLIKSGIFLMIGNVGTPTAKETLPI LKKNNVPAVGFFTGSELLRSRSELIINYRATYAEEIEAVVKIALNAGVKPYEICAYVQDDSYGMSGLKGLIYALVKAEVD QSILRPYEKVLEYKEKGNQGNSLLGPIGFYPRNTPYTKEGYNSLKQWEKNTGINCRLVVTAATSTNAARFINVAKKEGEP WVISSLSFAHKEELQFDLEEYGITDQVIITEVVPQLDSDLPIVQEAKSKLNSKFDHVSLEGYIIGKMTLKILKAIPGEIN RESFLKQAAMSKFDLGGVVIDFTKGLNNSSNLVLISILTPQGFKDFHKYDSEKLFNNY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51165; Mature: 51165
Theoretical pI: Translated: 7.49; Mature: 7.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLVWRYILDMTLEKKTDHQRNLGPTILAGCMGFMTIFAWACSPNPFKPLTLNVELTENV CEEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCC GSKNSDHTISTEGITEQTIRLGSVLALEGQEEILGNRMKSGLEAALDGQLVQEKKIQLIF CCCCCCCEEECCCCHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEE KNDYYEPLVARKKAQRLIKSGIFLMIGNVGTPTAKETLPILKKNNVPAVGFFTGSELLRS ECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHCCHHCCCCCCEEEEECHHHHHHC RSELIINYRATYAEEIEAVVKIALNAGVKPYEICAYVQDDSYGMSGLKGLIYALVKAEVD HHHEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH QSILRPYEKVLEYKEKGNQGNSLLGPIGFYPRNTPYTKEGYNSLKQWEKNTGINCRLVVT HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEE AATSTNAARFINVAKKEGEPWVISSLSFAHKEELQFDLEEYGITDQVIITEVVPQLDSDL ECCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC PIVQEAKSKLNSKFDHVSLEGYIIGKMTLKILKAIPGEINRESFLKQAAMSKFDLGGVVI CHHHHHHHHHCCCCCEEEECEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEE DFTKGLNNSSNLVLISILTPQGFKDFHKYDSEKLFNNY EEECCCCCCCCEEEEEEECCCCHHHHHHCCHHHHHCCC >Mature Secondary Structure MFLVWRYILDMTLEKKTDHQRNLGPTILAGCMGFMTIFAWACSPNPFKPLTLNVELTENV CEEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCC GSKNSDHTISTEGITEQTIRLGSVLALEGQEEILGNRMKSGLEAALDGQLVQEKKIQLIF CCCCCCCEEECCCCHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEE KNDYYEPLVARKKAQRLIKSGIFLMIGNVGTPTAKETLPILKKNNVPAVGFFTGSELLRS ECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHCCHHCCCCCCEEEEECHHHHHHC RSELIINYRATYAEEIEAVVKIALNAGVKPYEICAYVQDDSYGMSGLKGLIYALVKAEVD HHHEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH QSILRPYEKVLEYKEKGNQGNSLLGPIGFYPRNTPYTKEGYNSLKQWEKNTGINCRLVVT HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEE AATSTNAARFINVAKKEGEPWVISSLSFAHKEELQFDLEEYGITDQVIITEVVPQLDSDL ECCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC PIVQEAKSKLNSKFDHVSLEGYIIGKMTLKILKAIPGEINRESFLKQAAMSKFDLGGVVI CHHHHHHHHHCCCCCEEEECEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEE DFTKGLNNSSNLVLISILTPQGFKDFHKYDSEKLFNNY EEECCCCCCCCEEEEEEECCCCHHHHHHCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA