| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113475130
Identifier: 113475130
GI number: 113475130
Start: 2154982
End: 2155371
Strand: Direct
Name: 113475130
Synonym: Tery_1422
Alternate gene names: NA
Gene position: 2154982-2155371 (Clockwise)
Preceding gene: 113475127
Following gene: 113475141
Centisome position: 27.81
GC content: 34.1
Gene sequence:
>390_bases ATGTCGGATGTGAAAGTTCGCGATAGTAAAAGTGATCGTTATTTCTATCCAAATTTAGTTATTTCTTGTAATACTGAAGA TTTAAAGTCCCGTCAGTTTATCGAACATCCTACAGTAATTTTTGAAGTTCTTTCCCCCAGTACAGAAAAATACGATCGCG GCAATAAGTTTAAATATTATGGTCAAATTTCCAGTTTGCCAGAATATGTTTTAGTAGACTCAGAATCAATATCTGTAGAA GTTTTTCAACGCGGCGAGGGAAATTTTTGGCATTATTGCGAATATATAGAAGGTGAGTCAATTACATTATCTAGTATTGA GTTTACTTCTGCTATTGAAGTTTTATATGCAGGAGTTAACTTGGAAACTGATACTGTCCAGGGAGAATAG
Upstream 100 bases:
>100_bases TTTAGCTATGGCTTGAGCAAGTATTCCTCATAATGATATTGCGATTAACTTTTGTACAGCTCTCGTACCTCATCTCCGTC AAAAAGGATGTTGAGTTAAT
Downstream 100 bases:
>100_bases AAAGAATGGCCATTATTTGGTCGAGTATTAATTAAACTATAACGTTATAGTTTTTAGATTTTAGATAAAATAGATAGGGT AGCGATCGCCTAATTTCATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 129; Mature: 128
Protein sequence:
>129_residues MSDVKVRDSKSDRYFYPNLVISCNTEDLKSRQFIEHPTVIFEVLSPSTEKYDRGNKFKYYGQISSLPEYVLVDSESISVE VFQRGEGNFWHYCEYIEGESITLSSIEFTSAIEVLYAGVNLETDTVQGE
Sequences:
>Translated_129_residues MSDVKVRDSKSDRYFYPNLVISCNTEDLKSRQFIEHPTVIFEVLSPSTEKYDRGNKFKYYGQISSLPEYVLVDSESISVE VFQRGEGNFWHYCEYIEGESITLSSIEFTSAIEVLYAGVNLETDTVQGE >Mature_128_residues SDVKVRDSKSDRYFYPNLVISCNTEDLKSRQFIEHPTVIFEVLSPSTEKYDRGNKFKYYGQISSLPEYVLVDSESISVEV FQRGEGNFWHYCEYIEGESITLSSIEFTSAIEVLYAGVNLETDTVQGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To Synechocystis PCC 6803 sll1609 and slr1290 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008538 - InterPro: IPR012296 - InterPro: IPR011335 [H]
Pfam domain/function: PF05685 DUF820 [H]
EC number: NA
Molecular weight: Translated: 14835; Mature: 14703
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDVKVRDSKSDRYFYPNLVISCNTEDLKSRQFIEHPTVIFEVLSPSTEKYDRGNKFKYY CCCCCCCCCCCCCEECCCEEEEECCHHCCCCHHHCCCEEEEEECCCCCCCCCCCCEEEEE GQISSLPEYVLVDSESISVEVFQRGEGNFWHYCEYIEGESITLSSIEFTSAIEVLYAGVN EECCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEECCCEEEEEEECHHHHEEEEEECCC LETDTVQGE CCCCEECCC >Mature Secondary Structure SDVKVRDSKSDRYFYPNLVISCNTEDLKSRQFIEHPTVIFEVLSPSTEKYDRGNKFKYY CCCCCCCCCCCCEECCCEEEEECCHHCCCCHHHCCCEEEEEECCCCCCCCCCCCEEEEE GQISSLPEYVLVDSESISVEVFQRGEGNFWHYCEYIEGESITLSSIEFTSAIEVLYAGVN EECCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEECCCEEEEEEECHHHHEEEEEECCC LETDTVQGE CCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]