Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475014

Identifier: 113475014

GI number: 113475014

Start: 1949797

End: 1950114

Strand: Reverse

Name: 113475014

Synonym: Tery_1263

Alternate gene names: NA

Gene position: 1950114-1949797 (Counterclockwise)

Preceding gene: 113475015

Following gene: 113475013

Centisome position: 25.16

GC content: 31.45

Gene sequence:

>318_bases
TTGAGGTTGGTTGATATGGTGGAAAATCAGAAAATACCAGTCAAAACAGTATTAATGGATAGCTGGTATGCAACCCAAAG
ACTAATGGCTTTAATAGATAATTTAGGTAAAATTTACTATTGCCCTTTAAAAAGCAATGGTTTAGTAGACGATAGTGGGG
GTGTAAAAAAGTATCAAAAACTGGAAGAATTAAAATGGAATGAGTGGGAATTAACATCAGGAAAGATTATTAAAATAAAA
GGTTTTCCTAGAGATAAAAAAGTTAAATTATTCTGGGCTACTGTTTCCACAAACTTCAGCAGAATATATTGCTACTAA

Upstream 100 bases:

>100_bases
TGCTTATATTTTCATCCTAAAATAGAGCGATTCTGGATAATAGATTATCGTATTTATAATCCAGAAAATGATGAAAAGAG
TAAAATAGATAATGTAGAAG

Downstream 100 bases:

>100_bases
TGACCTTAGTTGTCAAAGTACAGATGATGTTGAGTTTGAGATTCAAACTAGGTGGAAAATTGAGGAATTCCACAGAGAAA
TTAAACAGTTAACAGGACTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MRLVDMVENQKIPVKTVLMDSWYATQRLMALIDNLGKIYYCPLKSNGLVDDSGGVKKYQKLEELKWNEWELTSGKIIKIK
GFPRDKKVKLFWATVSTNFSRIYCY

Sequences:

>Translated_105_residues
MRLVDMVENQKIPVKTVLMDSWYATQRLMALIDNLGKIYYCPLKSNGLVDDSGGVKKYQKLEELKWNEWELTSGKIIKIK
GFPRDKKVKLFWATVSTNFSRIYCY
>Mature_105_residues
MRLVDMVENQKIPVKTVLMDSWYATQRLMALIDNLGKIYYCPLKSNGLVDDSGGVKKYQKLEELKWNEWELTSGKIIKIK
GFPRDKKVKLFWATVSTNFSRIYCY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12330; Mature: 12330

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLVDMVENQKIPVKTVLMDSWYATQRLMALIDNLGKIYYCPLKSNGLVDDSGGVKKYQK
CCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCHHHHHH
LEELKWNEWELTSGKIIKIKGFPRDKKVKLFWATVSTNFSRIYCY
HHHCCCCCEEECCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEC
>Mature Secondary Structure
MRLVDMVENQKIPVKTVLMDSWYATQRLMALIDNLGKIYYCPLKSNGLVDDSGGVKKYQK
CCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCHHHHHH
LEELKWNEWELTSGKIIKIKGFPRDKKVKLFWATVSTNFSRIYCY
HHHCCCCCEEECCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA