Click here to switch to the map view.

The map label for this gene is psbD

Identifier: 113474993

GI number: 113474993

Start: 1904238

End: 1905296

Strand: Direct

Name: psbD

Synonym: Tery_1230

Alternate gene names: 113474993

Gene position: 1904238-1905296 (Clockwise)

Preceding gene: 113474989

Following gene: 113474994

Centisome position: 24.57

GC content: 43.25

Gene sequence:

>1059_bases
ATGACTGTAGCAGTCGGACGCCCACAATCTCAAAGAGGAGCATTTGATGTCCTCGATGACTGGCTAAAACGCGATCGCTT
TGTATTCGTTGGTTGGTCTGGTATACTTCTCTTCCCATGTGCTTTCTTGTCCATTGGAGGATGGTTAACTGGGACTACCT
TCGTCACTTCCTGGTATACCCACGGGTTAGCCAGTTCTTACCTAGAAGGATGTAATTTTCTAACAGTTGCAATTAGCAGC
CCAGCTTATAGCATGGGACATTCCCTACTCTTCCTTTGGGGCCCAGAGGCTCAGTGGGACTTTGCCCGTTGGTGTCAAAT
CGGTGGTCTCTGGTCATTCACTGCCCTACACGGTGCATTTGCTCTAATTGGATTCTGCCTACGTCAGATTGAAATTGCTC
GTTTGGTTGGAATACGTCCTTACAATGCTATTGCCTTCACAGGACCAATTGCAGTATTTGTAAGTGTATTTTTAATGTAC
CCATTGGGTCAATCAAGCTGGTTCTTTGCACCTAGTTTTGGTGTAGCTGGTATATTCAGATTTATCCTATTTTTACAAGG
ATTCCATAACTGGACACTCAACCCATTTCATATGATGGGTGTAGCAGGAATCTTGGGTGGTGCACTTTTGTGTGCTATTC
ATGGTGCTACAGTAGAAAACACACTTTTCCAAGATGGAGAGGCAGCAAATACCTTCCGCGCATTTGAGCCTACTCAATCT
GAAGAAACATATTCAATGGTGACAGCTAATCGTTTCTGGTCCCAAATTTTCGGTATTGCATTTTCCAACAAACGTTGGTT
ACACTTCTTCATGTTATTTGTACCAGTAACAGGATTGTGGATGAGTTCCATAGGTATAGTGGGTTTAGCATTCAACCTAC
GAGCTTATGACTTTGTATCTCAAGAGTTACGGGCAGCAGATGACCCAGAATTTGAAACATTTTATACCAAAAATATCTTG
CTAAATGAAGGTATCCGAGCTTGGATGTCTCCTGCAGACCAACCACATCAAAACTTTATGTTCCCAGAGGAAGTACTACC
TCGTGGTAACGCTCTTTAA

Upstream 100 bases:

>100_bases
TATTCTGCTCAAGTAGAACACAATTATTAATACATTAATGATGGTGGAGGACAAACATTAGCCGTAGTTATCATAATTAT
TTGATTTGGAGAACTATTTA

Downstream 100 bases:

>100_bases
TATACTCTAATTTTTTTGACAGGATAAGTTTAATACTTATCCTTAATAGTTCCTACACTAAATATGTAGGAGCTATTAAA
AAAAAATCAATACAGCAGTT

Product: photosystem II D2 protein (photosystem q(a) protein)

Products: NA

Alternate protein names: PSII D2 protein; Photosystem Q(A) protein

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MTVAVGRPQSQRGAFDVLDDWLKRDRFVFVGWSGILLFPCAFLSIGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAISS
PAYSMGHSLLFLWGPEAQWDFARWCQIGGLWSFTALHGAFALIGFCLRQIEIARLVGIRPYNAIAFTGPIAVFVSVFLMY
PLGQSSWFFAPSFGVAGIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFQDGEAANTFRAFEPTQS
EETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSSIGIVGLAFNLRAYDFVSQELRAADDPEFETFYTKNIL
LNEGIRAWMSPADQPHQNFMFPEEVLPRGNAL

Sequences:

>Translated_352_residues
MTVAVGRPQSQRGAFDVLDDWLKRDRFVFVGWSGILLFPCAFLSIGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAISS
PAYSMGHSLLFLWGPEAQWDFARWCQIGGLWSFTALHGAFALIGFCLRQIEIARLVGIRPYNAIAFTGPIAVFVSVFLMY
PLGQSSWFFAPSFGVAGIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFQDGEAANTFRAFEPTQS
EETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSSIGIVGLAFNLRAYDFVSQELRAADDPEFETFYTKNIL
LNEGIRAWMSPADQPHQNFMFPEEVLPRGNAL
>Mature_351_residues
TVAVGRPQSQRGAFDVLDDWLKRDRFVFVGWSGILLFPCAFLSIGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAISSP
AYSMGHSLLFLWGPEAQWDFARWCQIGGLWSFTALHGAFALIGFCLRQIEIARLVGIRPYNAIAFTGPIAVFVSVFLMYP
LGQSSWFFAPSFGVAGIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFQDGEAANTFRAFEPTQSE
ETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSSIGIVGLAFNLRAYDFVSQELRAADDPEFETFYTKNILL
NEGIRAWMSPADQPHQNFMFPEEVLPRGNAL

Specific function: One of the two reaction center proteins of photosystem II (PSII), D2 is needed for assembly of a stable PSII complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBD_TRIEI (Q116J3)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_721054.1
- ProteinModelPortal:   Q116J3
- SMR:   Q116J3
- STRING:   Q116J3
- GeneID:   4242157
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_1230
- NMPDR:   fig|203124.1.peg.1366
- eggNOG:   NOG05026
- HOGENOM:   HBG284199
- OMA:   WLTGTTF
- ProtClustDB:   CLSK892431
- BioCyc:   TERY203124:TERY_1230-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01383
- InterPro:   IPR000484
- InterPro:   IPR005868
- Gene3D:   G3DSA:1.20.85.10
- PRINTS:   PR00256
- TIGRFAMs:   TIGR01152

Pfam domain/function: PF00124 Photo_RC; SSF81483 Photo_RC_L/M

EC number: NA

Molecular weight: Translated: 39465; Mature: 39334

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS00244 REACTION_CENTER

Important sites: BINDING 214-214 BINDING 261-261

Signals:

None

Transmembrane regions:

HASH(0x162787c8)-; HASH(0x14bba1c8)-; HASH(0x163a0ae4)-; HASH(0x168db74c)-; HASH(0x168bd184)-;

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVAVGRPQSQRGAFDVLDDWLKRDRFVFVGWSGILLFPCAFLSIGGWLTGTTFVTSWYT
CEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHH
HGLASSYLEGCNFLTVAISSPAYSMGHSLLFLWGPEAQWDFARWCQIGGLWSFTALHGAF
HHHHHHHHCCCCEEEEEECCCCHHCCCEEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHH
ALIGFCLRQIEIARLVGIRPYNAIAFTGPIAVFVSVFLMYPLGQSSWFFAPSFGVAGIFR
HHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHH
FILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFQDGEAANTFRAFEPTQS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEECCCCCCC
EETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSSIGIVGLAFNLRAYDFVS
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHH
QELRAADDPEFETFYTKNILLNEGIRAWMSPADQPHQNFMFPEEVLPRGNAL
HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCH
>Mature Secondary Structure 
TVAVGRPQSQRGAFDVLDDWLKRDRFVFVGWSGILLFPCAFLSIGGWLTGTTFVTSWYT
EEECCCCCCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHH
HGLASSYLEGCNFLTVAISSPAYSMGHSLLFLWGPEAQWDFARWCQIGGLWSFTALHGAF
HHHHHHHHCCCCEEEEEECCCCHHCCCEEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHH
ALIGFCLRQIEIARLVGIRPYNAIAFTGPIAVFVSVFLMYPLGQSSWFFAPSFGVAGIFR
HHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHH
FILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFQDGEAANTFRAFEPTQS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEECCCCCCC
EETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSSIGIVGLAFNLRAYDFVS
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHH
QELRAADDPEFETFYTKNILLNEGIRAWMSPADQPHQNFMFPEEVLPRGNAL
HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA