| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474959
Identifier: 113474959
GI number: 113474959
Start: 1862476
End: 1863948
Strand: Reverse
Name: 113474959
Synonym: Tery_1189
Alternate gene names: NA
Gene position: 1863948-1862476 (Counterclockwise)
Preceding gene: 113474960
Following gene: 113474958
Centisome position: 24.05
GC content: 44.4
Gene sequence:
>1473_bases ATGGGACTTTATCTGATTGGAATTGGTGGAACGGGGGCTAAATGTGTTGAAGCAGTAGCTAAATTAGCTGCCATAGGCTT ATTTACTGAAGAGCCCATTAAGGTTTTATTTGTAGATGCAGATGAAACTAATGGAAATCTGGCTCGTGCTAGGACTAGTA TCAGTCTCTATAAAAAAACTTATGATTTGATCCCTACTGGGGACAAAAAAGATTGTGGGTGGATGAAAAGCAAAATCGAA TCTTTCGATCATTGGTCGCCTTTTGCCCAAGAGAAAGAACTGAGAACATTTTTTAACTACAACACAATCAAGCAAAAACA ACCTACTTTGGCCCATTTATTCGATGTCCTTTATACTAAAGAAGAACGGGAAGCTAACTTAGATGTAGGATTTAGGGGCA GACCGGCCATTGGTGCAGCGGTGATGAGTCAGGTAGATTTGGACAGGTTGGAGCAAGAGCCTTGGGGAAGATTGATCGAG GAAATTCAGGGAGATACCGGTGGCGGTAAAGAGGCAAAAATTTTTCTGTGTGGGTCTATATTTGGGGGGACCGGGGCTTC TGGACTGCCGACTATTGCCCGCCTGATCGATAATAAGTTGAAGAAAATCAAAGTACGCGATCGGGTTCAAACTGGTTGCC TCTTTGTACTCCCCTATTTTGGCTTTGCTCCAACACCCGGGGAAAACCCAGATGGGGTCTACGCTCGCTCCGAGCAGTTT TTACTGAACACGGAAGCGGCCCTTCGTTATTACGTCACTCAAGGTCAGGAAATCTTTGACCAAGTTTATCTCCTAGGTAA TCAAAACTTATCCCGAGTCAATTTTAGTATCGGCAAAGATAGTCAGCGCAACGATCCCCATTTCCTAGAACTATACGCCG CATTGGCTGCGCGTAACTTTTGGCGAGATTCATCTACAGCCAAAGGGTCTGTGATATTGATGACTCGCCAGCAGAGTGGG ACTATTTCCTGGGACGATATCCCAGACAAGGCAGAAGTCCAACCAGAGTTAGTGAATGCCACCAGATTTGCTTTTACATG GCTAGCAGAAATTGCTCCCGAACTAGAAGAAGCGAAAAAGGAAAAAAATGCTCGCTTTCAAAGGTTGGCTCCCTGGATGA TGGAATTCTACCAAACTGGCAGTAAATCTGGGGAGACTAAACCGGACTTTTCTGATGTTGACCAACAGGAAGCTATTGGA ATAATTAATAATTGGTGTGAAGATTATTTGGGCTGGCTATACTCTCTGCATCAGTGCGAAGGTGATAATATCGCTTTGTT TCAAGCCGATGCTTTCCCCCCTAACAAAAAATTGGCCGGAAATGAACTGCCAAATCTGATAGTTGGGGATAGTCGCGATA AAGGCAAAAAATCCCGAGATACGGTGAAAAAACTCAAGGATGGACTTAAGGCTACTCCACCCGGTGGGACTATAGGACTG GCTAAGTCCGTATATATGGCCTCTAGGATTTAA
Upstream 100 bases:
>100_bases TATTACTTTTTTGGTTGCCAACTGCAACCACTACTCCTGGGAGTTTAAAGTTTGTTCCCCCAGGTTCAATTTACTTGCGT CGTTTTTTTAGCGAATAATT
Downstream 100 bases:
>100_bases GGAAAAACTTAAGTTAGCAACTACCTACGGAGCCCAGAGCGCATGCTAAGTATAAAACGTCAAACAGTCCTTGAGCTTAG GCACAGTATAAGTTCTCCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 490; Mature: 489
Protein sequence:
>490_residues MGLYLIGIGGTGAKCVEAVAKLAAIGLFTEEPIKVLFVDADETNGNLARARTSISLYKKTYDLIPTGDKKDCGWMKSKIE SFDHWSPFAQEKELRTFFNYNTIKQKQPTLAHLFDVLYTKEEREANLDVGFRGRPAIGAAVMSQVDLDRLEQEPWGRLIE EIQGDTGGGKEAKIFLCGSIFGGTGASGLPTIARLIDNKLKKIKVRDRVQTGCLFVLPYFGFAPTPGENPDGVYARSEQF LLNTEAALRYYVTQGQEIFDQVYLLGNQNLSRVNFSIGKDSQRNDPHFLELYAALAARNFWRDSSTAKGSVILMTRQQSG TISWDDIPDKAEVQPELVNATRFAFTWLAEIAPELEEAKKEKNARFQRLAPWMMEFYQTGSKSGETKPDFSDVDQQEAIG IINNWCEDYLGWLYSLHQCEGDNIALFQADAFPPNKKLAGNELPNLIVGDSRDKGKKSRDTVKKLKDGLKATPPGGTIGL AKSVYMASRI
Sequences:
>Translated_490_residues MGLYLIGIGGTGAKCVEAVAKLAAIGLFTEEPIKVLFVDADETNGNLARARTSISLYKKTYDLIPTGDKKDCGWMKSKIE SFDHWSPFAQEKELRTFFNYNTIKQKQPTLAHLFDVLYTKEEREANLDVGFRGRPAIGAAVMSQVDLDRLEQEPWGRLIE EIQGDTGGGKEAKIFLCGSIFGGTGASGLPTIARLIDNKLKKIKVRDRVQTGCLFVLPYFGFAPTPGENPDGVYARSEQF LLNTEAALRYYVTQGQEIFDQVYLLGNQNLSRVNFSIGKDSQRNDPHFLELYAALAARNFWRDSSTAKGSVILMTRQQSG TISWDDIPDKAEVQPELVNATRFAFTWLAEIAPELEEAKKEKNARFQRLAPWMMEFYQTGSKSGETKPDFSDVDQQEAIG IINNWCEDYLGWLYSLHQCEGDNIALFQADAFPPNKKLAGNELPNLIVGDSRDKGKKSRDTVKKLKDGLKATPPGGTIGL AKSVYMASRI >Mature_489_residues GLYLIGIGGTGAKCVEAVAKLAAIGLFTEEPIKVLFVDADETNGNLARARTSISLYKKTYDLIPTGDKKDCGWMKSKIES FDHWSPFAQEKELRTFFNYNTIKQKQPTLAHLFDVLYTKEEREANLDVGFRGRPAIGAAVMSQVDLDRLEQEPWGRLIEE IQGDTGGGKEAKIFLCGSIFGGTGASGLPTIARLIDNKLKKIKVRDRVQTGCLFVLPYFGFAPTPGENPDGVYARSEQFL LNTEAALRYYVTQGQEIFDQVYLLGNQNLSRVNFSIGKDSQRNDPHFLELYAALAARNFWRDSSTAKGSVILMTRQQSGT ISWDDIPDKAEVQPELVNATRFAFTWLAEIAPELEEAKKEKNARFQRLAPWMMEFYQTGSKSGETKPDFSDVDQQEAIGI INNWCEDYLGWLYSLHQCEGDNIALFQADAFPPNKKLAGNELPNLIVGDSRDKGKKSRDTVKKLKDGLKATPPGGTIGLA KSVYMASRI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54592; Mature: 54460
Theoretical pI: Translated: 6.21; Mature: 6.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLYLIGIGGTGAKCVEAVAKLAAIGLFTEEPIKVLFVDADETNGNLARARTSISLYKKT CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH YDLIPTGDKKDCGWMKSKIESFDHWSPFAQEKELRTFFNYNTIKQKQPTLAHLFDVLYTK HHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC EEREANLDVGFRGRPAIGAAVMSQVDLDRLEQEPWGRLIEEIQGDTGGGKEAKIFLCGSI CHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEEEEC FGGTGASGLPTIARLIDNKLKKIKVRDRVQTGCLFVLPYFGFAPTPGENPDGVYARSEQF CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEECCCEE LLNTEAALRYYVTQGQEIFDQVYLLGNQNLSRVNFSIGKDSQRNDPHFLELYAALAARNF EEEHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH WRDSSTAKGSVILMTRQQSGTISWDDIPDKAEVQPELVNATRFAFTWLAEIAPELEEAKK CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH EKNARFQRLAPWMMEFYQTGSKSGETKPDFSDVDQQEAIGIINNWCEDYLGWLYSLHQCE HHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC GDNIALFQADAFPPNKKLAGNELPNLIVGDSRDKGKKSRDTVKKLKDGLKATPPGGTIGL CCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHH AKSVYMASRI HHHHHHHHCC >Mature Secondary Structure GLYLIGIGGTGAKCVEAVAKLAAIGLFTEEPIKVLFVDADETNGNLARARTSISLYKKT CEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH YDLIPTGDKKDCGWMKSKIESFDHWSPFAQEKELRTFFNYNTIKQKQPTLAHLFDVLYTK HHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC EEREANLDVGFRGRPAIGAAVMSQVDLDRLEQEPWGRLIEEIQGDTGGGKEAKIFLCGSI CHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEEEEC FGGTGASGLPTIARLIDNKLKKIKVRDRVQTGCLFVLPYFGFAPTPGENPDGVYARSEQF CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEECCCEE LLNTEAALRYYVTQGQEIFDQVYLLGNQNLSRVNFSIGKDSQRNDPHFLELYAALAARNF EEEHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH WRDSSTAKGSVILMTRQQSGTISWDDIPDKAEVQPELVNATRFAFTWLAEIAPELEEAKK CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH EKNARFQRLAPWMMEFYQTGSKSGETKPDFSDVDQQEAIGIINNWCEDYLGWLYSLHQCE HHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC GDNIALFQADAFPPNKKLAGNELPNLIVGDSRDKGKKSRDTVKKLKDGLKATPPGGTIGL CCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHH AKSVYMASRI HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA