| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474958
Identifier: 113474958
GI number: 113474958
Start: 1860117
End: 1862237
Strand: Reverse
Name: 113474958
Synonym: Tery_1188
Alternate gene names: NA
Gene position: 1862237-1860117 (Counterclockwise)
Preceding gene: 113474959
Following gene: 113474957
Centisome position: 24.03
GC content: 44.22
Gene sequence:
>2121_bases ATGACAGGAACACAAGTCAACAAAAGTTACGTTTTAGTCCTGCCCAAGTTAAAGCGGGATAGTGATGTGAAATCCAGCGA TACTCCTGGTAAATGGGAGGCACAACCAGCAAAAGCCTTTCAAGATGTGGCCTCTAGTCTGGATTATCAAGCTCCAGGAG AAATGAAAAGTGTTAGCTCTGTACCGACTATGTGGGCTCGTCCCTTATCCATGGAGATGGCTTTACATAATCCCTATTAT CCCATCCGAGATAAAATGGTCCAACAGTGGCAGGGGATGTTGGCGGCGGTTGCTTTGGCAGAAGTACGCCGCTTTCCCAT AACTGCTCAATTTTTAGACTTGGGGCTAGAAAAAGACCAAAATCCTTTCGCCCGTTCTCTATACGAACTGCTACCGGATC CAGTTAATGCCCTGTATGCCTTAGAAACCAAAAATCCCTGGCAAGACATTTATATATTTCTGTGGTATGGTATACTTGTG GGTCTTACTACTCCTAGTACTATAGTGGCCCCCTCTGAAGAAGGAAAATGGAATGGCTTGCCTTGGTGGAACAAACTGAC GGGTCAGTTGGAGTCTCCTCAACCACATCTCAATGTCAGCGAGAAGGCTCTCCTCTGGCGCTGGTTAGAAAATTTGCGGG GAATTTTAGGCGATACTTCCTATGAGGGCCAAGCAGAGGCAATTGATGCGATCGGCGGATTGCTAGATGACTTCCAAAAT AGTTTGGGGCCTCGCCCAATGGACCAGGGCCTGAGTTTGAGCAATAATCCTCAGTTTTTTGGTGTGGCCATTAATCGAGG GGTGTTGGAAGGTATTAATCGTCCGGTGAAAGCTGAGGCTCAGTCTTCTTGGGTTCGCTTAGTTCCTAGTAAGAATAAGG GGCAGGTAAAACCTCTATTGATTATTGACCAGAACATTTCTTCAGCTTGGGGAAAACCGCCTCAAGATATTTGGATACAC GAGGAGCAAACTCTGGCTTCCCTACAAATACAAGACTTGCGTGAAAAGAAAATTACTTGGCCAGATGTTGAGTGGAAGGA GTCCAAGGATTTATTTATGGAAGAATTTCGGTTTGTAGACCAAGAAGATGCTCTACCGGGAGCTTTCCTACCTCCGGGGA CGAAGTTAATTTTTCAGGGTAAAAGTATTACGCCCCTGATACCTATCAATCCTATACTTCTCGACTATTTTACTCCGGAA GATTTAATCGCTAAGGTCGAGTTTGCTCAAATAAATAGTAGTGATGGACCTCAAGTGCGGGTAACCCTGGACTTGCCTTT GTCAGGGATGAAAGATGACCCTCGGCAACCTCAGAATTATCGGATTTCCAAAGATTATCCCATAGAAGATAAAAATGCTT TGCCGGAAGTTCCGGTATTGGAAGTATGGCCTAATTTCCTGGCGGATGGATGGCGCTCTTATTATGCTTTTTATTACGAT GCTGAATTTGGAGAGGATACTTTTCAAGTGTTTCTACCGGAAGCGAAAGATCGTCATCCTTTTATAGATGGTAGGGGTGC TTATCAAATAACTCACCTAGAAGAATTTCCTAGTTTCATTGAGTGTCAGGATAGTTCTGGAAGTCCCATTGGCTTGATTC TGCTGAAAAGTCCAGAGAAAATTAGGCTGGGAGAACGATGGAAAGTGGGGGTAGATTTCGGCACTTCTTTCACCAATATC TATGTCAATAGTAACGGTTTATCGGAGCCATTGAAGTTGGAAAATTTGCACTTGAAGGTGACGGAGGTTTTGACAGAAAC CCGCAGGCCTGTATTGTTTGAATACTTTGTCCCGGAAAGCTTTATCCCGACTGACAAACCGTTACCCTTGTCTAGCGTGC TGACAACTAGGGGGAAGCCAAATAAGACGGAAAACCTAGATTTCCCAATTATTGATGGCAGGATATATATTCCTGATCGC AACAGGTTTGAACCGCTCAGGGGATGGATAGAAACAGACTTGAAGTGGAAAAATTACCATCCTAACAAATTGTTTTTGAA ACATTTAGCCTTACATGTAAGCGCGGTTGCCGCCAAGGAAGGAGTCAAACAAATTCAGTGGTGTATTTCCTATCCTACGG CTTTTTCTCGTCGTGATAAAAATAGGTATGCGAAGACTTAG
Upstream 100 bases:
>100_bases AATCAGGTTTCAAGCCTCCCTTTTGAAGGGGATGAAAAAAATGTCATAGGTATTTCAAGCCTCTGGCTTTAGCTGTCGAT ACTGATAACTGATAACTGAT
Downstream 100 bases:
>100_bases CAAGATTTGACGGAGGAACTTCAAGCTCAAACTGGAATTACACACATTTGCCCGCAGTCAGATGATGTAGGTTTATTCAA AACTGAGAGTTTGGCGATCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 706; Mature: 705
Protein sequence:
>706_residues MTGTQVNKSYVLVLPKLKRDSDVKSSDTPGKWEAQPAKAFQDVASSLDYQAPGEMKSVSSVPTMWARPLSMEMALHNPYY PIRDKMVQQWQGMLAAVALAEVRRFPITAQFLDLGLEKDQNPFARSLYELLPDPVNALYALETKNPWQDIYIFLWYGILV GLTTPSTIVAPSEEGKWNGLPWWNKLTGQLESPQPHLNVSEKALLWRWLENLRGILGDTSYEGQAEAIDAIGGLLDDFQN SLGPRPMDQGLSLSNNPQFFGVAINRGVLEGINRPVKAEAQSSWVRLVPSKNKGQVKPLLIIDQNISSAWGKPPQDIWIH EEQTLASLQIQDLREKKITWPDVEWKESKDLFMEEFRFVDQEDALPGAFLPPGTKLIFQGKSITPLIPINPILLDYFTPE DLIAKVEFAQINSSDGPQVRVTLDLPLSGMKDDPRQPQNYRISKDYPIEDKNALPEVPVLEVWPNFLADGWRSYYAFYYD AEFGEDTFQVFLPEAKDRHPFIDGRGAYQITHLEEFPSFIECQDSSGSPIGLILLKSPEKIRLGERWKVGVDFGTSFTNI YVNSNGLSEPLKLENLHLKVTEVLTETRRPVLFEYFVPESFIPTDKPLPLSSVLTTRGKPNKTENLDFPIIDGRIYIPDR NRFEPLRGWIETDLKWKNYHPNKLFLKHLALHVSAVAAKEGVKQIQWCISYPTAFSRRDKNRYAKT
Sequences:
>Translated_706_residues MTGTQVNKSYVLVLPKLKRDSDVKSSDTPGKWEAQPAKAFQDVASSLDYQAPGEMKSVSSVPTMWARPLSMEMALHNPYY PIRDKMVQQWQGMLAAVALAEVRRFPITAQFLDLGLEKDQNPFARSLYELLPDPVNALYALETKNPWQDIYIFLWYGILV GLTTPSTIVAPSEEGKWNGLPWWNKLTGQLESPQPHLNVSEKALLWRWLENLRGILGDTSYEGQAEAIDAIGGLLDDFQN SLGPRPMDQGLSLSNNPQFFGVAINRGVLEGINRPVKAEAQSSWVRLVPSKNKGQVKPLLIIDQNISSAWGKPPQDIWIH EEQTLASLQIQDLREKKITWPDVEWKESKDLFMEEFRFVDQEDALPGAFLPPGTKLIFQGKSITPLIPINPILLDYFTPE DLIAKVEFAQINSSDGPQVRVTLDLPLSGMKDDPRQPQNYRISKDYPIEDKNALPEVPVLEVWPNFLADGWRSYYAFYYD AEFGEDTFQVFLPEAKDRHPFIDGRGAYQITHLEEFPSFIECQDSSGSPIGLILLKSPEKIRLGERWKVGVDFGTSFTNI YVNSNGLSEPLKLENLHLKVTEVLTETRRPVLFEYFVPESFIPTDKPLPLSSVLTTRGKPNKTENLDFPIIDGRIYIPDR NRFEPLRGWIETDLKWKNYHPNKLFLKHLALHVSAVAAKEGVKQIQWCISYPTAFSRRDKNRYAKT >Mature_705_residues TGTQVNKSYVLVLPKLKRDSDVKSSDTPGKWEAQPAKAFQDVASSLDYQAPGEMKSVSSVPTMWARPLSMEMALHNPYYP IRDKMVQQWQGMLAAVALAEVRRFPITAQFLDLGLEKDQNPFARSLYELLPDPVNALYALETKNPWQDIYIFLWYGILVG LTTPSTIVAPSEEGKWNGLPWWNKLTGQLESPQPHLNVSEKALLWRWLENLRGILGDTSYEGQAEAIDAIGGLLDDFQNS LGPRPMDQGLSLSNNPQFFGVAINRGVLEGINRPVKAEAQSSWVRLVPSKNKGQVKPLLIIDQNISSAWGKPPQDIWIHE EQTLASLQIQDLREKKITWPDVEWKESKDLFMEEFRFVDQEDALPGAFLPPGTKLIFQGKSITPLIPINPILLDYFTPED LIAKVEFAQINSSDGPQVRVTLDLPLSGMKDDPRQPQNYRISKDYPIEDKNALPEVPVLEVWPNFLADGWRSYYAFYYDA EFGEDTFQVFLPEAKDRHPFIDGRGAYQITHLEEFPSFIECQDSSGSPIGLILLKSPEKIRLGERWKVGVDFGTSFTNIY VNSNGLSEPLKLENLHLKVTEVLTETRRPVLFEYFVPESFIPTDKPLPLSSVLTTRGKPNKTENLDFPIIDGRIYIPDRN RFEPLRGWIETDLKWKNYHPNKLFLKHLALHVSAVAAKEGVKQIQWCISYPTAFSRRDKNRYAKT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80375; Mature: 80244
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGTQVNKSYVLVLPKLKRDSDVKSSDTPGKWEAQPAKAFQDVASSLDYQAPGEMKSVSS CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHC VPTMWARPLSMEMALHNPYYPIRDKMVQQWQGMLAAVALAEVRRFPITAQFLDLGLEKDQ CCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCC NPFARSLYELLPDPVNALYALETKNPWQDIYIFLWYGILVGLTTPSTIVAPSEEGKWNGL CHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC PWWNKLTGQLESPQPHLNVSEKALLWRWLENLRGILGDTSYEGQAEAIDAIGGLLDDFQN CCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH SLGPRPMDQGLSLSNNPQFFGVAINRGVLEGINRPVKAEAQSSWVRLVPSKNKGQVKPLL HCCCCCCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCEEE IIDQNISSAWGKPPQDIWIHEEQTLASLQIQDLREKKITWPDVEWKESKDLFMEEFRFVD EEECCCHHHCCCCCHHEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC QEDALPGAFLPPGTKLIFQGKSITPLIPINPILLDYFTPEDLIAKVEFAQINSSDGPQVR CCCCCCCCCCCCCCEEEECCCCCCCEECCCCEEEECCCCHHHHHEEEEEECCCCCCCEEE VTLDLPLSGMKDDPRQPQNYRISKDYPIEDKNALPEVPVLEVWPNFLADGWRSYYAFYYD EEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEEE AEFGEDTFQVFLPEAKDRHPFIDGRGAYQITHLEEFPSFIECQDSSGSPIGLILLKSPEK CCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEHHHCCCCEEECCCCCCCEEEEEECCCCC IRLGERWKVGVDFGTSFTNIYVNSNGLSEPLKLENLHLKVTEVLTETRRPVLFEYFVPES EECCCEEEEEEEECCCEEEEEECCCCCCCCEEECCEEEHHHHHHHHCCCCEEEEEECCCC FIPTDKPLPLSSVLTTRGKPNKTENLDFPIIDGRIYIPDRNRFEPLRGWIETDLKWKNYH CCCCCCCCCHHHHHHCCCCCCCCCCCCCEEECCEEECCCCCCCCHHHHHHHCCCEECCCC PNKLFLKHLALHVSAVAAKEGVKQIQWCISYPTAFSRRDKNRYAKT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHCCCC >Mature Secondary Structure TGTQVNKSYVLVLPKLKRDSDVKSSDTPGKWEAQPAKAFQDVASSLDYQAPGEMKSVSS CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHC VPTMWARPLSMEMALHNPYYPIRDKMVQQWQGMLAAVALAEVRRFPITAQFLDLGLEKDQ CCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCC NPFARSLYELLPDPVNALYALETKNPWQDIYIFLWYGILVGLTTPSTIVAPSEEGKWNGL CHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC PWWNKLTGQLESPQPHLNVSEKALLWRWLENLRGILGDTSYEGQAEAIDAIGGLLDDFQN CCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH SLGPRPMDQGLSLSNNPQFFGVAINRGVLEGINRPVKAEAQSSWVRLVPSKNKGQVKPLL HCCCCCCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCEEE IIDQNISSAWGKPPQDIWIHEEQTLASLQIQDLREKKITWPDVEWKESKDLFMEEFRFVD EEECCCHHHCCCCCHHEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC QEDALPGAFLPPGTKLIFQGKSITPLIPINPILLDYFTPEDLIAKVEFAQINSSDGPQVR CCCCCCCCCCCCCCEEEECCCCCCCEECCCCEEEECCCCHHHHHEEEEEECCCCCCCEEE VTLDLPLSGMKDDPRQPQNYRISKDYPIEDKNALPEVPVLEVWPNFLADGWRSYYAFYYD EEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEEE AEFGEDTFQVFLPEAKDRHPFIDGRGAYQITHLEEFPSFIECQDSSGSPIGLILLKSPEK CCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEHHHCCCCEEECCCCCCCEEEEEECCCCC IRLGERWKVGVDFGTSFTNIYVNSNGLSEPLKLENLHLKVTEVLTETRRPVLFEYFVPES EECCCEEEEEEEECCCEEEEEECCCCCCCCEEECCEEEHHHHHHHHCCCCEEEEEECCCC FIPTDKPLPLSSVLTTRGKPNKTENLDFPIIDGRIYIPDRNRFEPLRGWIETDLKWKNYH CCCCCCCCCHHHHHHCCCCCCCCCCCCCEEECCEEECCCCCCCCHHHHHHHCCCEECCCC PNKLFLKHLALHVSAVAAKEGVKQIQWCISYPTAFSRRDKNRYAKT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA