Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113474959

Identifier: 113474959

GI number: 113474959

Start: 1862476

End: 1863948

Strand: Reverse

Name: 113474959

Synonym: Tery_1189

Alternate gene names: NA

Gene position: 1863948-1862476 (Counterclockwise)

Preceding gene: 113474960

Following gene: 113474958

Centisome position: 24.05

GC content: 44.4

Gene sequence:

>1473_bases
ATGGGACTTTATCTGATTGGAATTGGTGGAACGGGGGCTAAATGTGTTGAAGCAGTAGCTAAATTAGCTGCCATAGGCTT
ATTTACTGAAGAGCCCATTAAGGTTTTATTTGTAGATGCAGATGAAACTAATGGAAATCTGGCTCGTGCTAGGACTAGTA
TCAGTCTCTATAAAAAAACTTATGATTTGATCCCTACTGGGGACAAAAAAGATTGTGGGTGGATGAAAAGCAAAATCGAA
TCTTTCGATCATTGGTCGCCTTTTGCCCAAGAGAAAGAACTGAGAACATTTTTTAACTACAACACAATCAAGCAAAAACA
ACCTACTTTGGCCCATTTATTCGATGTCCTTTATACTAAAGAAGAACGGGAAGCTAACTTAGATGTAGGATTTAGGGGCA
GACCGGCCATTGGTGCAGCGGTGATGAGTCAGGTAGATTTGGACAGGTTGGAGCAAGAGCCTTGGGGAAGATTGATCGAG
GAAATTCAGGGAGATACCGGTGGCGGTAAAGAGGCAAAAATTTTTCTGTGTGGGTCTATATTTGGGGGGACCGGGGCTTC
TGGACTGCCGACTATTGCCCGCCTGATCGATAATAAGTTGAAGAAAATCAAAGTACGCGATCGGGTTCAAACTGGTTGCC
TCTTTGTACTCCCCTATTTTGGCTTTGCTCCAACACCCGGGGAAAACCCAGATGGGGTCTACGCTCGCTCCGAGCAGTTT
TTACTGAACACGGAAGCGGCCCTTCGTTATTACGTCACTCAAGGTCAGGAAATCTTTGACCAAGTTTATCTCCTAGGTAA
TCAAAACTTATCCCGAGTCAATTTTAGTATCGGCAAAGATAGTCAGCGCAACGATCCCCATTTCCTAGAACTATACGCCG
CATTGGCTGCGCGTAACTTTTGGCGAGATTCATCTACAGCCAAAGGGTCTGTGATATTGATGACTCGCCAGCAGAGTGGG
ACTATTTCCTGGGACGATATCCCAGACAAGGCAGAAGTCCAACCAGAGTTAGTGAATGCCACCAGATTTGCTTTTACATG
GCTAGCAGAAATTGCTCCCGAACTAGAAGAAGCGAAAAAGGAAAAAAATGCTCGCTTTCAAAGGTTGGCTCCCTGGATGA
TGGAATTCTACCAAACTGGCAGTAAATCTGGGGAGACTAAACCGGACTTTTCTGATGTTGACCAACAGGAAGCTATTGGA
ATAATTAATAATTGGTGTGAAGATTATTTGGGCTGGCTATACTCTCTGCATCAGTGCGAAGGTGATAATATCGCTTTGTT
TCAAGCCGATGCTTTCCCCCCTAACAAAAAATTGGCCGGAAATGAACTGCCAAATCTGATAGTTGGGGATAGTCGCGATA
AAGGCAAAAAATCCCGAGATACGGTGAAAAAACTCAAGGATGGACTTAAGGCTACTCCACCCGGTGGGACTATAGGACTG
GCTAAGTCCGTATATATGGCCTCTAGGATTTAA

Upstream 100 bases:

>100_bases
TATTACTTTTTTGGTTGCCAACTGCAACCACTACTCCTGGGAGTTTAAAGTTTGTTCCCCCAGGTTCAATTTACTTGCGT
CGTTTTTTTAGCGAATAATT

Downstream 100 bases:

>100_bases
GGAAAAACTTAAGTTAGCAACTACCTACGGAGCCCAGAGCGCATGCTAAGTATAAAACGTCAAACAGTCCTTGAGCTTAG
GCACAGTATAAGTTCTCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 490; Mature: 489

Protein sequence:

>490_residues
MGLYLIGIGGTGAKCVEAVAKLAAIGLFTEEPIKVLFVDADETNGNLARARTSISLYKKTYDLIPTGDKKDCGWMKSKIE
SFDHWSPFAQEKELRTFFNYNTIKQKQPTLAHLFDVLYTKEEREANLDVGFRGRPAIGAAVMSQVDLDRLEQEPWGRLIE
EIQGDTGGGKEAKIFLCGSIFGGTGASGLPTIARLIDNKLKKIKVRDRVQTGCLFVLPYFGFAPTPGENPDGVYARSEQF
LLNTEAALRYYVTQGQEIFDQVYLLGNQNLSRVNFSIGKDSQRNDPHFLELYAALAARNFWRDSSTAKGSVILMTRQQSG
TISWDDIPDKAEVQPELVNATRFAFTWLAEIAPELEEAKKEKNARFQRLAPWMMEFYQTGSKSGETKPDFSDVDQQEAIG
IINNWCEDYLGWLYSLHQCEGDNIALFQADAFPPNKKLAGNELPNLIVGDSRDKGKKSRDTVKKLKDGLKATPPGGTIGL
AKSVYMASRI

Sequences:

>Translated_490_residues
MGLYLIGIGGTGAKCVEAVAKLAAIGLFTEEPIKVLFVDADETNGNLARARTSISLYKKTYDLIPTGDKKDCGWMKSKIE
SFDHWSPFAQEKELRTFFNYNTIKQKQPTLAHLFDVLYTKEEREANLDVGFRGRPAIGAAVMSQVDLDRLEQEPWGRLIE
EIQGDTGGGKEAKIFLCGSIFGGTGASGLPTIARLIDNKLKKIKVRDRVQTGCLFVLPYFGFAPTPGENPDGVYARSEQF
LLNTEAALRYYVTQGQEIFDQVYLLGNQNLSRVNFSIGKDSQRNDPHFLELYAALAARNFWRDSSTAKGSVILMTRQQSG
TISWDDIPDKAEVQPELVNATRFAFTWLAEIAPELEEAKKEKNARFQRLAPWMMEFYQTGSKSGETKPDFSDVDQQEAIG
IINNWCEDYLGWLYSLHQCEGDNIALFQADAFPPNKKLAGNELPNLIVGDSRDKGKKSRDTVKKLKDGLKATPPGGTIGL
AKSVYMASRI
>Mature_489_residues
GLYLIGIGGTGAKCVEAVAKLAAIGLFTEEPIKVLFVDADETNGNLARARTSISLYKKTYDLIPTGDKKDCGWMKSKIES
FDHWSPFAQEKELRTFFNYNTIKQKQPTLAHLFDVLYTKEEREANLDVGFRGRPAIGAAVMSQVDLDRLEQEPWGRLIEE
IQGDTGGGKEAKIFLCGSIFGGTGASGLPTIARLIDNKLKKIKVRDRVQTGCLFVLPYFGFAPTPGENPDGVYARSEQFL
LNTEAALRYYVTQGQEIFDQVYLLGNQNLSRVNFSIGKDSQRNDPHFLELYAALAARNFWRDSSTAKGSVILMTRQQSGT
ISWDDIPDKAEVQPELVNATRFAFTWLAEIAPELEEAKKEKNARFQRLAPWMMEFYQTGSKSGETKPDFSDVDQQEAIGI
INNWCEDYLGWLYSLHQCEGDNIALFQADAFPPNKKLAGNELPNLIVGDSRDKGKKSRDTVKKLKDGLKATPPGGTIGLA
KSVYMASRI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54592; Mature: 54460

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLYLIGIGGTGAKCVEAVAKLAAIGLFTEEPIKVLFVDADETNGNLARARTSISLYKKT
CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
YDLIPTGDKKDCGWMKSKIESFDHWSPFAQEKELRTFFNYNTIKQKQPTLAHLFDVLYTK
HHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC
EEREANLDVGFRGRPAIGAAVMSQVDLDRLEQEPWGRLIEEIQGDTGGGKEAKIFLCGSI
CHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEEEEC
FGGTGASGLPTIARLIDNKLKKIKVRDRVQTGCLFVLPYFGFAPTPGENPDGVYARSEQF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEECCCEE
LLNTEAALRYYVTQGQEIFDQVYLLGNQNLSRVNFSIGKDSQRNDPHFLELYAALAARNF
EEEHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
WRDSSTAKGSVILMTRQQSGTISWDDIPDKAEVQPELVNATRFAFTWLAEIAPELEEAKK
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EKNARFQRLAPWMMEFYQTGSKSGETKPDFSDVDQQEAIGIINNWCEDYLGWLYSLHQCE
HHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
GDNIALFQADAFPPNKKLAGNELPNLIVGDSRDKGKKSRDTVKKLKDGLKATPPGGTIGL
CCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHH
AKSVYMASRI
HHHHHHHHCC
>Mature Secondary Structure 
GLYLIGIGGTGAKCVEAVAKLAAIGLFTEEPIKVLFVDADETNGNLARARTSISLYKKT
CEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
YDLIPTGDKKDCGWMKSKIESFDHWSPFAQEKELRTFFNYNTIKQKQPTLAHLFDVLYTK
HHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC
EEREANLDVGFRGRPAIGAAVMSQVDLDRLEQEPWGRLIEEIQGDTGGGKEAKIFLCGSI
CHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEEEEC
FGGTGASGLPTIARLIDNKLKKIKVRDRVQTGCLFVLPYFGFAPTPGENPDGVYARSEQF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEECCCEE
LLNTEAALRYYVTQGQEIFDQVYLLGNQNLSRVNFSIGKDSQRNDPHFLELYAALAARNF
EEEHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
WRDSSTAKGSVILMTRQQSGTISWDDIPDKAEVQPELVNATRFAFTWLAEIAPELEEAKK
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EKNARFQRLAPWMMEFYQTGSKSGETKPDFSDVDQQEAIGIINNWCEDYLGWLYSLHQCE
HHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
GDNIALFQADAFPPNKKLAGNELPNLIVGDSRDKGKKSRDTVKKLKDGLKATPPGGTIGL
CCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHH
AKSVYMASRI
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA