| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113474956
Identifier: 113474956
GI number: 113474956
Start: 1857687
End: 1858649
Strand: Reverse
Name: 113474956
Synonym: Tery_1186
Alternate gene names: NA
Gene position: 1858649-1857687 (Counterclockwise)
Preceding gene: 113474957
Following gene: 113474955
Centisome position: 23.98
GC content: 36.55
Gene sequence:
>963_bases ATGAGTAACTGTCCACAGTGCCAGGCTGAAGTAAACAAGGGCGATAATTTTTGTCGGAATTGTGGTTATGCTCTGCATGA TAGTTTAACTGGCGATAAACCTCAAGGGTTTGAAAATATTAGAGAAACATCAGCACATGCTGCAACTTGGGAGCATAACA TAAAAGAGCAATTGGTTCAAATGTTAGAATCGTTCAAATCTCAATTGCAAGAACTAACTCAGAAGCAGAACAACAATACT GCTTCTTTAGAGGCAGAAAGAGAAGAAATTAACCAAATTAATAATGAGAACTCAAAACTCCAAGAGGAGTTGCAAGAACT AATTCAGAAGCAGAACAACAATACTGCTTCTTTAGAGGCAGGAAGAGAAGAAATTAACCAAATTAATAATGAGATCTCAA AACTCCAAGATGAGTTGAGGCCTATCAAAAAGTTGATTAGTTTGTTTGGAGAATGGTTCAAAAATAATCCAGAATATCTG CCATTGAGCACAACGATAGACCCGCAAGTAAAGTTGCAAACATCTACAGAACTAAATACCACCAGAGAAGTAGAGGAGGA AGGAAAATATCAATTACCTCTGAGTGAAGAAGAACAGTTGTTAAAAGACTACAAGGACGAAGAAAAACGTACTGTTTTAT CACAAAATGCGATAACTGTTTCAGCAGCAACAGAGAGTATTGATAACAGTCGTTTAGGTATTGGTAAATCAGTTCTGGAA AAAAAGCGCCGGGGCAACTATTGGATATTAAAACAAGGTAGTTCGCAGTATTTAGTTCCTAGCGATACAATAAAGATTAA TGAATATAGCATCGATACTCTGAAAAATTTGTTTGAGTGTCAAGGTGTCAATAGTGAAGGATCTAAGGGTAAATTTGAAC TATTAAAGCCTGCTAAAGTTTCTTCTATTGGAGAAGAAAAGTGGCAACTGTCCGAGCCAGGGAAACTGGAATTTATTGGT TAA
Upstream 100 bases:
>100_bases GTAGGGTGTGTTAGATAGCTTTAATGACTAGCTGTAAAAATGATTTAATAATTCGTCACAATATACCATTTTAGAGAAGT TAAGGAGCTTAGTAGGAAAT
Downstream 100 bases:
>100_bases TTTATTGAACTAAGAGGTTAGTTATCATGTGGAAAAGCATATATAGTTGGAAAAGCACATACAGTTTATTGCTGTCTTTG GTATTAATGTCTGGTTCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 320; Mature: 319
Protein sequence:
>320_residues MSNCPQCQAEVNKGDNFCRNCGYALHDSLTGDKPQGFENIRETSAHAATWEHNIKEQLVQMLESFKSQLQELTQKQNNNT ASLEAEREEINQINNENSKLQEELQELIQKQNNNTASLEAGREEINQINNEISKLQDELRPIKKLISLFGEWFKNNPEYL PLSTTIDPQVKLQTSTELNTTREVEEEGKYQLPLSEEEQLLKDYKDEEKRTVLSQNAITVSAATESIDNSRLGIGKSVLE KKRRGNYWILKQGSSQYLVPSDTIKINEYSIDTLKNLFECQGVNSEGSKGKFELLKPAKVSSIGEEKWQLSEPGKLEFIG
Sequences:
>Translated_320_residues MSNCPQCQAEVNKGDNFCRNCGYALHDSLTGDKPQGFENIRETSAHAATWEHNIKEQLVQMLESFKSQLQELTQKQNNNT ASLEAEREEINQINNENSKLQEELQELIQKQNNNTASLEAGREEINQINNEISKLQDELRPIKKLISLFGEWFKNNPEYL PLSTTIDPQVKLQTSTELNTTREVEEEGKYQLPLSEEEQLLKDYKDEEKRTVLSQNAITVSAATESIDNSRLGIGKSVLE KKRRGNYWILKQGSSQYLVPSDTIKINEYSIDTLKNLFECQGVNSEGSKGKFELLKPAKVSSIGEEKWQLSEPGKLEFIG >Mature_319_residues SNCPQCQAEVNKGDNFCRNCGYALHDSLTGDKPQGFENIRETSAHAATWEHNIKEQLVQMLESFKSQLQELTQKQNNNTA SLEAEREEINQINNENSKLQEELQELIQKQNNNTASLEAGREEINQINNEISKLQDELRPIKKLISLFGEWFKNNPEYLP LSTTIDPQVKLQTSTELNTTREVEEEGKYQLPLSEEEQLLKDYKDEEKRTVLSQNAITVSAATESIDNSRLGIGKSVLEK KRRGNYWILKQGSSQYLVPSDTIKINEYSIDTLKNLFECQGVNSEGSKGKFELLKPAKVSSIGEEKWQLSEPGKLEFIG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36432; Mature: 36301
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNCPQCQAEVNKGDNFCRNCGYALHDSLTGDKPQGFENIRETSAHAATWEHNIKEQLVQ CCCCCCHHHHHCCCHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MLESFKSQLQELTQKQNNNTASLEAEREEINQINNENSKLQEELQELIQKQNNNTASLEA HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHH GREEINQINNEISKLQDELRPIKKLISLFGEWFKNNPEYLPLSTTIDPQVKLQTSTELNT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCH TREVEEEGKYQLPLSEEEQLLKDYKDEEKRTVLSQNAITVSAATESIDNSRLGIGKSVLE HHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCCCCCCHHHHH KKRRGNYWILKQGSSQYLVPSDTIKINEYSIDTLKNLFECQGVNSEGSKGKFELLKPAKV HHHCCCEEEEECCCCCEECCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEECCHHH SSIGEEKWQLSEPGKLEFIG HHCCCHHCCCCCCCCEEECC >Mature Secondary Structure SNCPQCQAEVNKGDNFCRNCGYALHDSLTGDKPQGFENIRETSAHAATWEHNIKEQLVQ CCCCCHHHHHCCCHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MLESFKSQLQELTQKQNNNTASLEAEREEINQINNENSKLQEELQELIQKQNNNTASLEA HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHH GREEINQINNEISKLQDELRPIKKLISLFGEWFKNNPEYLPLSTTIDPQVKLQTSTELNT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCH TREVEEEGKYQLPLSEEEQLLKDYKDEEKRTVLSQNAITVSAATESIDNSRLGIGKSVLE HHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCCCCCCHHHHH KKRRGNYWILKQGSSQYLVPSDTIKINEYSIDTLKNLFECQGVNSEGSKGKFELLKPAKV HHHCCCEEEEECCCCCEECCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEECCHHH SSIGEEKWQLSEPGKLEFIG HHCCCHHCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA