| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474906
Identifier: 113474906
GI number: 113474906
Start: 1786867
End: 1788537
Strand: Reverse
Name: 113474906
Synonym: Tery_1132
Alternate gene names: NA
Gene position: 1788537-1786867 (Counterclockwise)
Preceding gene: 113474908
Following gene: 113474905
Centisome position: 23.08
GC content: 28.67
Gene sequence:
>1671_bases ATGTTAAGCATAGCTGAAAAAGAACAAAAAGTATTATGGAGAATATTTTTAACTGTAATAAGTATTTCACTTCCAATTGC ATTAAATTATTTATCCAGTGACAATAAATTATTGAAATACCTGTCTTATATTGTCCTATTCATTTGGGGTATCCTAGTAA TTTACTTGTTATTTTCTGGGTTTATAAAGTATTACAAGACTAGAAATACATTTAGGCGTTTATTAACAGTAAGAGATAAA AAAGTCATTGACAATTATCTGACTGCTGTAAACCAGGAAGTAGAATTTGAACTTGGATTTGATCTAAAAAGTAATTATGT AAGTTTATCCGGAGAGCCAGGAAATCCAAATGGTCTGATGTCTCAACAAGCTTATGAAGAAAAAGGAGGTAGTCAGCGAA CTAACATAGCAAATCTTGATAAATACTTGTTATCTCCAAACAAATCTAGGGTATTTATATACGGTCCTCCAGGAAGTGGA AAGTCTACAACTTTATATAAAGCACTTGCAAACTATACCAAAGAATTTTCCGAAAGCATAGGAGATTTTATTCCCATTTT TATTCATGCTAATGATGTTGAAAAAGTGTTAAACAAGCATGGTAAAAATATAACAAAAATTCTGGCATTTATTACAAATG TATATGAACTTAATGGTAAGTTATCAAAGCCTGAGTTTAAAGATTTTATAGTTTTATGGAATAAGAAACTATCTCTCAAT TTTGTGATTATTATTGATGCTTTAGATGAGTTTATAGACAAAAGTAAACGGGAAACTCTCTTTGATTATTTATCAATTTT AATGAAAAATAGCGGTAATAAAACTAGATGGATTTTATCATGTAGAGAAGAAGAATATAAAGCGTATGCTAATACTTTGC AAGTAGCAAATATCAGAATAAAACCCATGAGTGTACTGCAAATTAAAGAACTTTTAAATAAGCGATTAACAAGTTTGCAA CACGATACTTTAGCCCAGAATCAAATTAGAAAAACTATTTTGACAATCATAAATACTAATGCAGAACAGGAATCCTTTTT AAGGAACCCTTACTATTTATCGTTATGGCTATATCAAGTTTCATTCTCTTCTGATAAATCAGATTTTGCTGATACAAAAA ATCGCATCCCATCTATCAGCAGTTTGCACGATCTAGAGTTAAAACGGGAGATATTAAAAGGTATGGATATAAATCCACAA AACCGTTTTGAAAAAATAGAACCAGTCCTATTTAAATACCTTTTGGAAGTATTATCAGTTTTGAGCTTTCATCTTATGAG GATATCTTTAAAAATTCAACAAACTTCTCATTACGGTGTAAGTATTTCCAATGATAGTATTGTTAATTCACTATATGAAA AATACAAATATTTGAAAAATGATATAGTCAATTTTGACAAAAAAATAAGCCAAAGGTTAGCTCAATATCAATCTTATGAA CTATCAGTAGATAAAATCCAAGAACTCAAAATTATTGAAAGTGATAGACAGTTTATAAGAATACTGAAAATCTTAAATAC CTCTCAGTTGCAGTGGCAAAATTTAGGTTTGAGAAGTCAAAATAAATTTGATTTTTTTATTGTAATTCCTAGTATTATGG ATCTGGCAGAACAATATCGCCTAATAGAATTAGATGCCAATAATGATTATTTTTCTAGATTTTTTAATTAA
Upstream 100 bases:
>100_bases AGTGCTATACTTCGACTGCTATATGATAAATATTACACTAGCTTTTCAGGCATAATTAGGTACAAATTTTTATGACTTTA GGAAATAGCAAATAAAGGAT
Downstream 100 bases:
>100_bases AGAGCTGCTGACTATTTGGCAGCTCGCTATCTTGTTGAAAATGGCTTGAAGGAAATACTCCAGAAAGGAGAAATTAATTT TTGGTTATTCAGAACAATAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 556; Mature: 556
Protein sequence:
>556_residues MLSIAEKEQKVLWRIFLTVISISLPIALNYLSSDNKLLKYLSYIVLFIWGILVIYLLFSGFIKYYKTRNTFRRLLTVRDK KVIDNYLTAVNQEVEFELGFDLKSNYVSLSGEPGNPNGLMSQQAYEEKGGSQRTNIANLDKYLLSPNKSRVFIYGPPGSG KSTTLYKALANYTKEFSESIGDFIPIFIHANDVEKVLNKHGKNITKILAFITNVYELNGKLSKPEFKDFIVLWNKKLSLN FVIIIDALDEFIDKSKRETLFDYLSILMKNSGNKTRWILSCREEEYKAYANTLQVANIRIKPMSVLQIKELLNKRLTSLQ HDTLAQNQIRKTILTIINTNAEQESFLRNPYYLSLWLYQVSFSSDKSDFADTKNRIPSISSLHDLELKREILKGMDINPQ NRFEKIEPVLFKYLLEVLSVLSFHLMRISLKIQQTSHYGVSISNDSIVNSLYEKYKYLKNDIVNFDKKISQRLAQYQSYE LSVDKIQELKIIESDRQFIRILKILNTSQLQWQNLGLRSQNKFDFFIVIPSIMDLAEQYRLIELDANNDYFSRFFN
Sequences:
>Translated_556_residues MLSIAEKEQKVLWRIFLTVISISLPIALNYLSSDNKLLKYLSYIVLFIWGILVIYLLFSGFIKYYKTRNTFRRLLTVRDK KVIDNYLTAVNQEVEFELGFDLKSNYVSLSGEPGNPNGLMSQQAYEEKGGSQRTNIANLDKYLLSPNKSRVFIYGPPGSG KSTTLYKALANYTKEFSESIGDFIPIFIHANDVEKVLNKHGKNITKILAFITNVYELNGKLSKPEFKDFIVLWNKKLSLN FVIIIDALDEFIDKSKRETLFDYLSILMKNSGNKTRWILSCREEEYKAYANTLQVANIRIKPMSVLQIKELLNKRLTSLQ HDTLAQNQIRKTILTIINTNAEQESFLRNPYYLSLWLYQVSFSSDKSDFADTKNRIPSISSLHDLELKREILKGMDINPQ NRFEKIEPVLFKYLLEVLSVLSFHLMRISLKIQQTSHYGVSISNDSIVNSLYEKYKYLKNDIVNFDKKISQRLAQYQSYE LSVDKIQELKIIESDRQFIRILKILNTSQLQWQNLGLRSQNKFDFFIVIPSIMDLAEQYRLIELDANNDYFSRFFN >Mature_556_residues MLSIAEKEQKVLWRIFLTVISISLPIALNYLSSDNKLLKYLSYIVLFIWGILVIYLLFSGFIKYYKTRNTFRRLLTVRDK KVIDNYLTAVNQEVEFELGFDLKSNYVSLSGEPGNPNGLMSQQAYEEKGGSQRTNIANLDKYLLSPNKSRVFIYGPPGSG KSTTLYKALANYTKEFSESIGDFIPIFIHANDVEKVLNKHGKNITKILAFITNVYELNGKLSKPEFKDFIVLWNKKLSLN FVIIIDALDEFIDKSKRETLFDYLSILMKNSGNKTRWILSCREEEYKAYANTLQVANIRIKPMSVLQIKELLNKRLTSLQ HDTLAQNQIRKTILTIINTNAEQESFLRNPYYLSLWLYQVSFSSDKSDFADTKNRIPSISSLHDLELKREILKGMDINPQ NRFEKIEPVLFKYLLEVLSVLSFHLMRISLKIQQTSHYGVSISNDSIVNSLYEKYKYLKNDIVNFDKKISQRLAQYQSYE LSVDKIQELKIIESDRQFIRILKILNTSQLQWQNLGLRSQNKFDFFIVIPSIMDLAEQYRLIELDANNDYFSRFFN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64889; Mature: 64889
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSIAEKEQKVLWRIFLTVISISLPIALNYLSSDNKLLKYLSYIVLFIWGILVIYLLFSG CCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FIKYYKTRNTFRRLLTVRDKKVIDNYLTAVNQEVEFELGFDLKSNYVSLSGEPGNPNGLM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCCCCCC SQQAYEEKGGSQRTNIANLDKYLLSPNKSRVFIYGPPGSGKSTTLYKALANYTKEFSESI CHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH GDFIPIFIHANDVEKVLNKHGKNITKILAFITNVYELNGKLSKPEFKDFIVLWNKKLSLN CCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHCEEEEECCCEEEE FVIIIDALDEFIDKSKRETLFDYLSILMKNSGNKTRWILSCREEEYKAYANTLQVANIRI EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHEEEEEEE KPMSVLQIKELLNKRLTSLQHDTLAQNQIRKTILTIINTNAEQESFLRNPYYLSLWLYQV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEEEEEE SFSSDKSDFADTKNRIPSISSLHDLELKREILKGMDINPQNRFEKIEPVLFKYLLEVLSV ECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH LSFHLMRISLKIQQTSHYGVSISNDSIVNSLYEKYKYLKNDIVNFDKKISQRLAQYQSYE HHHHHHHHEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LSVDKIQELKIIESDRQFIRILKILNTSQLQWQNLGLRSQNKFDFFIVIPSIMDLAEQYR CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCEEEEECHHHHHHHHCCE LIELDANNDYFSRFFN EEEEECCCHHHHHHCC >Mature Secondary Structure MLSIAEKEQKVLWRIFLTVISISLPIALNYLSSDNKLLKYLSYIVLFIWGILVIYLLFSG CCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FIKYYKTRNTFRRLLTVRDKKVIDNYLTAVNQEVEFELGFDLKSNYVSLSGEPGNPNGLM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCCCCCC SQQAYEEKGGSQRTNIANLDKYLLSPNKSRVFIYGPPGSGKSTTLYKALANYTKEFSESI CHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH GDFIPIFIHANDVEKVLNKHGKNITKILAFITNVYELNGKLSKPEFKDFIVLWNKKLSLN CCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHCEEEEECCCEEEE FVIIIDALDEFIDKSKRETLFDYLSILMKNSGNKTRWILSCREEEYKAYANTLQVANIRI EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHEEEEEEE KPMSVLQIKELLNKRLTSLQHDTLAQNQIRKTILTIINTNAEQESFLRNPYYLSLWLYQV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEEEEEE SFSSDKSDFADTKNRIPSISSLHDLELKREILKGMDINPQNRFEKIEPVLFKYLLEVLSV ECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH LSFHLMRISLKIQQTSHYGVSISNDSIVNSLYEKYKYLKNDIVNFDKKISQRLAQYQSYE HHHHHHHHEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LSVDKIQELKIIESDRQFIRILKILNTSQLQWQNLGLRSQNKFDFFIVIPSIMDLAEQYR CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCEEEEECHHHHHHHHCCE LIELDANNDYFSRFFN EEEEECCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA