| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is ubiE [H]
Identifier: 113474848
GI number: 113474848
Start: 1671148
End: 1671966
Strand: Reverse
Name: ubiE [H]
Synonym: Tery_1067
Alternate gene names: 113474848
Gene position: 1671966-1671148 (Counterclockwise)
Preceding gene: 113474852
Following gene: 113474846
Centisome position: 21.57
GC content: 33.46
Gene sequence:
>819_bases ATGAGTAATTCAATCAAAAAATTTAGAGAATTTGAATATAATGCGTGGCAAAAATCTGTAGACCAATACGATAGTTCTTT TGCTTCTCTAACTAATCAAATGATTCAACCACTTCTGAATGCTGTCAACGCCAAAAAAGGAAACAAAATACTTGATATTG CTACTGGACCTGGTTATGTAGCTACAGATGCTGCTAAACGTGAATGTAATGTAATTGGATTAGATTTTTCTGATGGGATG TTAAATAAGGCTAAACAACTTAATCCTGACCTAGAATTTATTCAAGGAGGAGCTGAATTTTTACCTTTTGAAAATGAAGA GTTTGATGCTGTTGTGATGAATTTTGGTATTTTACATTTGGCTGAACCTCAAAAGGCAATCAATGAAGCATTTAGAGTTT TGCGTTATGCAGGAAAATTTGCTTTTACTGCTTGGGATATAATGGATAAATGTATTGGTATGAAGCTAGTTTATGAAGTA GTTAAAGCTCATGGAAATTTAGAAGTATCTTTGCCTGAAGGGCCTCCATTTTTTTATTTTAGTGAAGAGCAAAACTGTAT TTATGGATTAAAAAATGCTGGCTTTTCTAGTCCTTTAGTAAGTAAATTTTCTTTGGCCTGGGAGTTAGCAAATGCTGATG AATGGTTTGATGCTTTCTATAAAGGTGCTCCTAGAACAGGTGCTTTACTTCGGAGTCAAGCTCAGGAAAATATTGCAGAT ATTAAAGCAGCTTTTCATCAAATATCACAACCTTATGTTGATAAAAATACATTAATTTTACCTATGTCTGCGTTAGTGGC ATCAGGAACAAAAATGTGA
Upstream 100 bases:
>100_bases TTACTTTTATTAATTGATACCAAAGAATTAATGTCAATAAATTATATTATAAAATTTACTGGATAATTATCAGCAGTCAA ACTAATAGCTAATAACTAAA
Downstream 100 bases:
>100_bases CTAATAATGTGACTAATATAACTCTAGGTATAAGTCATCAACTACAAGTAAAAACTCGAGGTTAACAATATTATAGCCTA TATTTTTGCAGACATAATGT
Product: type 11 methyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MSNSIKKFREFEYNAWQKSVDQYDSSFASLTNQMIQPLLNAVNAKKGNKILDIATGPGYVATDAAKRECNVIGLDFSDGM LNKAKQLNPDLEFIQGGAEFLPFENEEFDAVVMNFGILHLAEPQKAINEAFRVLRYAGKFAFTAWDIMDKCIGMKLVYEV VKAHGNLEVSLPEGPPFFYFSEEQNCIYGLKNAGFSSPLVSKFSLAWELANADEWFDAFYKGAPRTGALLRSQAQENIAD IKAAFHQISQPYVDKNTLILPMSALVASGTKM
Sequences:
>Translated_272_residues MSNSIKKFREFEYNAWQKSVDQYDSSFASLTNQMIQPLLNAVNAKKGNKILDIATGPGYVATDAAKRECNVIGLDFSDGM LNKAKQLNPDLEFIQGGAEFLPFENEEFDAVVMNFGILHLAEPQKAINEAFRVLRYAGKFAFTAWDIMDKCIGMKLVYEV VKAHGNLEVSLPEGPPFFYFSEEQNCIYGLKNAGFSSPLVSKFSLAWELANADEWFDAFYKGAPRTGALLRSQAQENIAD IKAAFHQISQPYVDKNTLILPMSALVASGTKM >Mature_271_residues SNSIKKFREFEYNAWQKSVDQYDSSFASLTNQMIQPLLNAVNAKKGNKILDIATGPGYVATDAAKRECNVIGLDFSDGML NKAKQLNPDLEFIQGGAEFLPFENEEFDAVVMNFGILHLAEPQKAINEAFRVLRYAGKFAFTAWDIMDKCIGMKLVYEVV KAHGNLEVSLPEGPPFFYFSEEQNCIYGLKNAGFSSPLVSKFSLAWELANADEWFDAFYKGAPRTGALLRSQAQENIADI KAAFHQISQPYVDKNTLILPMSALVASGTKM
Specific function: Methyltransferase required for the conversion of dimethylmenaquinone (DMKH2) to menaquinone (MKH2) [H]
COG id: COG0500
COG function: function code QR; SAM-dependent methyltransferases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily. UbiE family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004033 [H]
Pfam domain/function: PF01209 Ubie_methyltran [H]
EC number: NA
Molecular weight: Translated: 30301; Mature: 30170
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSIKKFREFEYNAWQKSVDQYDSSFASLTNQMIQPLLNAVNAKKGNKILDIATGPGYV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEE ATDAAKRECNVIGLDFSDGMLNKAKQLNPDLEFIQGGAEFLPFENEEFDAVVMNFGILHL ECCHHHCCCCEEEEECCCCHHHHHHHCCCCHHHHCCCHHHCCCCCCCHHHHHHHHCHHEE AEPQKAINEAFRVLRYAGKFAFTAWDIMDKCIGMKLVYEVVKAHGNLEVSLPEGPPFFYF CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEE SEEQNCIYGLKNAGFSSPLVSKFSLAWELANADEWFDAFYKGAPRTGALLRSQAQENIAD CCCCCCEEEECCCCCCCHHHHHHHHHHEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH IKAAFHQISQPYVDKNTLILPMSALVASGTKM HHHHHHHHCCCCCCCCCEEEEHHHHHHCCCCC >Mature Secondary Structure SNSIKKFREFEYNAWQKSVDQYDSSFASLTNQMIQPLLNAVNAKKGNKILDIATGPGYV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEE ATDAAKRECNVIGLDFSDGMLNKAKQLNPDLEFIQGGAEFLPFENEEFDAVVMNFGILHL ECCHHHCCCCEEEEECCCCHHHHHHHCCCCHHHHCCCHHHCCCCCCCHHHHHHHHCHHEE AEPQKAINEAFRVLRYAGKFAFTAWDIMDKCIGMKLVYEVVKAHGNLEVSLPEGPPFFYF CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEE SEEQNCIYGLKNAGFSSPLVSKFSLAWELANADEWFDAFYKGAPRTGALLRSQAQENIAD CCCCCCEEEECCCCCCCHHHHHHHHHHEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH IKAAFHQISQPYVDKNTLILPMSALVASGTKM HHHHHHHHCCCCCCCCCEEEEHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA