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The map label for this gene is ynaI [C]

Identifier: 113474846

GI number: 113474846

Start: 1665756

End: 1666877

Strand: Reverse

Name: ynaI [C]

Synonym: Tery_1065

Alternate gene names: 113474846

Gene position: 1666877-1665756 (Counterclockwise)

Preceding gene: 113474848

Following gene: 113474844

Centisome position: 21.51

GC content: 30.39

Gene sequence:

>1122_bases
ATGGAAGCAATTTCGGTAATTATCAACAATATCACAACTATCAAAATTATGAATATACCAGTCATAACAATACTTTTTAT
ATGCCTGGTACTAATAACAACATTAGTCTTCAAAAGATTATTAAGCATAATTGTAATTAAACGAATTGAGGCTTTAACTA
GTAAGACAAAAACAACCCTTGATGATCAATTAATTGCAGTTCTTAAAAAGCCTATTGGATGGTTTATCTATTTACTAGGA
TTGTGGATAATACAATTAATATTGACAGATTATATTTCTCCACAATTAAATCAAACAATCACAGGAATTATTAATTTAGC
AATAGTAGGTAATTTCGCTCTAATTATCTACCGTATATCTCCAATTTTAGGAGAATTTTTTATAATTTTATCAGCTCAAA
CAGACACTGAATTGGATGATATTATTAGCCCCTATATTCCGAAACTACTAAGATTAACTGCCATCGTAATATTTGGTTTA
AAAGTAGCAGAATTATTACTGGGAGCTTCTGCTACTGCATTACTTGGTTTAATCGGTGGTGCTGGTCTTACATTAGGTCT
ATTATTTAAGGATTTCGTAGGTGATTGGTTAGCTACTATTATAATTTATAGTGATAGTTTGTATCGCATAGATGATTGGC
TTTTATTGCCAAGTGGTCGTTGGGCAGAGGTTAAACATATTGGTATTAGAAGTACAACAATTTATATAGGTTTTGAGGGA
GCTACCCTGAAAGTTCCTAACTCTAAAATGATTGATGGTAATATTAAAAATTTATCCCAACAGCCAAATGAAAAGAAGAA
AGCAGCTATTGATTTGTATATCAAGATTGATGGAATTTCAGCTAGAAAGATAGCTTATCTTAACGATAAAATTCGAGGAA
TTCCCAAATCAATTGACCTTTTATATGACTCTTGTGTCGTGAGATTTAATGGATTAGAAAAAAATGCTCGTGTGATTAGA
GTAATTGGATTTACTAATGATTTAGACAATTATTCGAGAGCTTATGACCAATTAAATTTGGCAATATTAGCTTTATTGGA
GCAAGAGGAAATAGATTTATTTGATGTGAATATTCTTAGTGATACAGAAACTTATCAAAATTGGCAGTCTAGTCAAAATT
AG

Upstream 100 bases:

>100_bases
ACCTAAATCTACCACCTTCTTATTAATTAATAACATTGACTATTAACTTAAAAACTACAAACTTTTTCAATTACTTTAAC
CTAATTATTATTAGCCAATT

Downstream 100 bases:

>100_bases
GTATTGAAGTAGGGAATAAGAACAATGCTTTTTGTGGGATAATTTCTCATCATTTTTATGGCTAGTTATTGTTAGATTTT
AGTAAGGAAAAATTCTGAAC

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MEAISVIINNITTIKIMNIPVITILFICLVLITTLVFKRLLSIIVIKRIEALTSKTKTTLDDQLIAVLKKPIGWFIYLLG
LWIIQLILTDYISPQLNQTITGIINLAIVGNFALIIYRISPILGEFFIILSAQTDTELDDIISPYIPKLLRLTAIVIFGL
KVAELLLGASATALLGLIGGAGLTLGLLFKDFVGDWLATIIIYSDSLYRIDDWLLLPSGRWAEVKHIGIRSTTIYIGFEG
ATLKVPNSKMIDGNIKNLSQQPNEKKKAAIDLYIKIDGISARKIAYLNDKIRGIPKSIDLLYDSCVVRFNGLEKNARVIR
VIGFTNDLDNYSRAYDQLNLAILALLEQEEIDLFDVNILSDTETYQNWQSSQN

Sequences:

>Translated_373_residues
MEAISVIINNITTIKIMNIPVITILFICLVLITTLVFKRLLSIIVIKRIEALTSKTKTTLDDQLIAVLKKPIGWFIYLLG
LWIIQLILTDYISPQLNQTITGIINLAIVGNFALIIYRISPILGEFFIILSAQTDTELDDIISPYIPKLLRLTAIVIFGL
KVAELLLGASATALLGLIGGAGLTLGLLFKDFVGDWLATIIIYSDSLYRIDDWLLLPSGRWAEVKHIGIRSTTIYIGFEG
ATLKVPNSKMIDGNIKNLSQQPNEKKKAAIDLYIKIDGISARKIAYLNDKIRGIPKSIDLLYDSCVVRFNGLEKNARVIR
VIGFTNDLDNYSRAYDQLNLAILALLEQEEIDLFDVNILSDTETYQNWQSSQN
>Mature_373_residues
MEAISVIINNITTIKIMNIPVITILFICLVLITTLVFKRLLSIIVIKRIEALTSKTKTTLDDQLIAVLKKPIGWFIYLLG
LWIIQLILTDYISPQLNQTITGIINLAIVGNFALIIYRISPILGEFFIILSAQTDTELDDIISPYIPKLLRLTAIVIFGL
KVAELLLGASATALLGLIGGAGLTLGLLFKDFVGDWLATIIIYSDSLYRIDDWLLLPSGRWAEVKHIGIRSTTIYIGFEG
ATLKVPNSKMIDGNIKNLSQQPNEKKKAAIDLYIKIDGISARKIAYLNDKIRGIPKSIDLLYDSCVVRFNGLEKNARVIR
VIGFTNDLDNYSRAYDQLNLAILALLEQEEIDLFDVNILSDTETYQNWQSSQN

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 41717; Mature: 41717

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAISVIINNITTIKIMNIPVITILFICLVLITTLVFKRLLSIIVIKRIEALTSKTKTTL
CCHHHEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DDQLIAVLKKPIGWFIYLLGLWIIQLILTDYISPQLNQTITGIINLAIVGNFALIIYRIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PILGEFFIILSAQTDTELDDIISPYIPKLLRLTAIVIFGLKVAELLLGASATALLGLIGG
HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
AGLTLGLLFKDFVGDWLATIIIYSDSLYRIDDWLLLPSGRWAEVKHIGIRSTTIYIGFEG
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEECC
ATLKVPNSKMIDGNIKNLSQQPNEKKKAAIDLYIKIDGISARKIAYLNDKIRGIPKSIDL
CEEECCCCCEECCCHHHHCCCCCCCCCEEEEEEEEEECCCCCEEEECCHHHCCCCHHHHH
LYDSCVVRFNGLEKNARVIRVIGFTNDLDNYSRAYDQLNLAILALLEQEEIDLFDVNILS
HHHHHHHEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
DTETYQNWQSSQN
CCHHHHHHCCCCC
>Mature Secondary Structure
MEAISVIINNITTIKIMNIPVITILFICLVLITTLVFKRLLSIIVIKRIEALTSKTKTTL
CCHHHEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DDQLIAVLKKPIGWFIYLLGLWIIQLILTDYISPQLNQTITGIINLAIVGNFALIIYRIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PILGEFFIILSAQTDTELDDIISPYIPKLLRLTAIVIFGLKVAELLLGASATALLGLIGG
HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
AGLTLGLLFKDFVGDWLATIIIYSDSLYRIDDWLLLPSGRWAEVKHIGIRSTTIYIGFEG
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEECC
ATLKVPNSKMIDGNIKNLSQQPNEKKKAAIDLYIKIDGISARKIAYLNDKIRGIPKSIDL
CEEECCCCCEECCCHHHHCCCCCCCCCEEEEEEEEEECCCCCEEEECCHHHCCCCHHHHH
LYDSCVVRFNGLEKNARVIRVIGFTNDLDNYSRAYDQLNLAILALLEQEEIDLFDVNILS
HHHHHHHEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
DTETYQNWQSSQN
CCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]