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The map label for this gene is cpeD [H]

Identifier: 113474789

GI number: 113474789

Start: 1563071

End: 1563907

Strand: Direct

Name: cpeD [H]

Synonym: Tery_0999

Alternate gene names: 113474789

Gene position: 1563071-1563907 (Clockwise)

Preceding gene: 113474782

Following gene: 113474791

Centisome position: 20.17

GC content: 34.65

Gene sequence:

>837_bases
ATGATAGAGACAAAATATTTATTCTATTCAATAAATAAACGAATGAAAAAGTTAGCCACATCAAAAACTTTAGGGATAGA
TACCTTTGAAGTTTACCCTTTAGAACTCCGCCCCAATCCTACTGAGGAAGATGTACAAATAATAATTAGGGCAGTTTACA
AACAGATATTGGGCAATCAGTACATTATGGAAAGCAACCGTCTTTCAACTGCTGAGTCTCAACTGCGTAATGGAGAAATT
ACTGTTAGGGAATTTGTTCGACAGATAGCTCAATCTAGTTTGTATCAATCTCTATTTTTTAATAGTAATAATCAATATCG
CTTTATTGAGCTAAACTACAAGCACCTATTAGGCCGTGCTCCTCAAGATCAAACAGAAATTTCTCAGCACGTTCAAATTT
ATAACGAAAAGGGATATGAAGCCGAAATAGATTCCTATATTGATACTCAAGAATATAACGAAAATTTTGGAGAATCAATT
GTACCTTATCCCTATGGTATTACTTCCCAAATTGGTTTAAAAAATAATACCTTTAATCGAATATTTTCCTTGTTAGGTGG
ACCGGCTACTAATGACGGAGATAATCGTTCTCAATTACTTTCTTCTGTTGCTAGTAATTTACCCACTCCTATTAAACTTC
AAGCTAGAGGAAATGGAGCTAACTATGGGAATATGGGCAAACGTTTCCGTATTGTTTATACTACCTCTAAGGTATCAGCT
AGACTGAACCGCCTCAGTAAGAAAGAATTGATAATCAACTATACTGAGATGTCCCCATTTGTACAAAGAATTCATCAGAC
TGGCGGGAAGATTATTAGTATTACTGAGAAAGTCTAA

Upstream 100 bases:

>100_bases
AGAATGTCTCTTTTGTCTCTCTTTCTGAGGAAGAAAGTAACAATTCGTAAATAAGTAAACATTTGTTACAATTTTTCAGT
CAATGAGGTACCAAGAACTT

Downstream 100 bases:

>100_bases
TGTTTGGTTGTGGGTGAGTTTAAAACCTATCTCTAGCTGTTAAAAACTTTGATTTTTAATCAAAGGAAAATAGATGTAGA
TTATTACTGCTCAGTTTCTA

Product: phycobilisome linker polypeptide

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MIETKYLFYSINKRMKKLATSKTLGIDTFEVYPLELRPNPTEEDVQIIIRAVYKQILGNQYIMESNRLSTAESQLRNGEI
TVREFVRQIAQSSLYQSLFFNSNNQYRFIELNYKHLLGRAPQDQTEISQHVQIYNEKGYEAEIDSYIDTQEYNENFGESI
VPYPYGITSQIGLKNNTFNRIFSLLGGPATNDGDNRSQLLSSVASNLPTPIKLQARGNGANYGNMGKRFRIVYTTSKVSA
RLNRLSKKELIINYTEMSPFVQRIHQTGGKIISITEKV

Sequences:

>Translated_278_residues
MIETKYLFYSINKRMKKLATSKTLGIDTFEVYPLELRPNPTEEDVQIIIRAVYKQILGNQYIMESNRLSTAESQLRNGEI
TVREFVRQIAQSSLYQSLFFNSNNQYRFIELNYKHLLGRAPQDQTEISQHVQIYNEKGYEAEIDSYIDTQEYNENFGESI
VPYPYGITSQIGLKNNTFNRIFSLLGGPATNDGDNRSQLLSSVASNLPTPIKLQARGNGANYGNMGKRFRIVYTTSKVSA
RLNRLSKKELIINYTEMSPFVQRIHQTGGKIISITEKV
>Mature_278_residues
MIETKYLFYSINKRMKKLATSKTLGIDTFEVYPLELRPNPTEEDVQIIIRAVYKQILGNQYIMESNRLSTAESQLRNGEI
TVREFVRQIAQSSLYQSLFFNSNNQYRFIELNYKHLLGRAPQDQTEISQHVQIYNEKGYEAEIDSYIDTQEYNENFGESI
VPYPYGITSQIGLKNNTFNRIFSLLGGPATNDGDNRSQLLSSVASNLPTPIKLQARGNGANYGNMGKRFRIVYTTSKVSA
RLNRLSKKELIINYTEMSPFVQRIHQTGGKIISITEKV

Specific function: Rod linker protein, associated with phycoerythrin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Associated with phycoerythrin [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- ProDom:   PD000852 [H]

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 31897; Mature: 31897

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIETKYLFYSINKRMKKLATSKTLGIDTFEVYPLELRPNPTEEDVQIIIRAVYKQILGNQ
CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCE
YIMESNRLSTAESQLRNGEITVREFVRQIAQSSLYQSLFFNSNNQYRFIELNYKHLLGRA
EEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHCCCC
PQDQTEISQHVQIYNEKGYEAEIDSYIDTQEYNENFGESIVPYPYGITSQIGLKNNTFNR
CCCHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
IFSLLGGPATNDGDNRSQLLSSVASNLPTPIKLQARGNGANYGNMGKRFRIVYTTSKVSA
HHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEECHHHHH
RLNRLSKKELIINYTEMSPFVQRIHQTGGKIISITEKV
HHHHHCCHHHEEEEHHHHHHHHHHHHCCCCEEEEECCC
>Mature Secondary Structure
MIETKYLFYSINKRMKKLATSKTLGIDTFEVYPLELRPNPTEEDVQIIIRAVYKQILGNQ
CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCE
YIMESNRLSTAESQLRNGEITVREFVRQIAQSSLYQSLFFNSNNQYRFIELNYKHLLGRA
EEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHCCCC
PQDQTEISQHVQIYNEKGYEAEIDSYIDTQEYNENFGESIVPYPYGITSQIGLKNNTFNR
CCCHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
IFSLLGGPATNDGDNRSQLLSSVASNLPTPIKLQARGNGANYGNMGKRFRIVYTTSKVSA
HHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEECHHHHH
RLNRLSKKELIINYTEMSPFVQRIHQTGGKIISITEKV
HHHHHCCHHHEEEEHHHHHHHHHHHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1694529 [H]