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The map label for this gene is cpcC [H]

Identifier: 113474777

GI number: 113474777

Start: 1549118

End: 1549912

Strand: Direct

Name: cpcC [H]

Synonym: Tery_0985

Alternate gene names: 113474777

Gene position: 1549118-1549912 (Clockwise)

Preceding gene: 113474770

Following gene: 113474778

Centisome position: 19.99

GC content: 38.49

Gene sequence:

>795_bases
ATGGGCAATTTAGCCTTATCAGCAACTTTAGGATTAGATGCTTTTGAAGTTGAACCATTAGAGTTGCGTTCTAATTTTAC
AGAAGATGACTTACAAACTGTTATTCGAGCGGTCTATAAACAGGTATTAGGAAATGAATATATGATGGAAAGCCAACGTC
TTCACAGTCCAGAAGCTCTGTTGAGAAATGGATCCATTAATGTACGTGAGTTTATCAGAGTTGTGGCCAAATCACCTTTG
TATCAGTCTCTCTTCTTTCATAGTTCTTCCCAAAACCGATTTATTGAACTCAACTTTAAACACCTTTTAGGTCGTCCTCC
TCTCGATCAAGCGGAAATTAGTGATCATGTTTTAATATATCGCGAGCAAGGATATGATGCGGAAATAGATTCTTACCTTG
ATAGTAATGACTATATTAATAGTTTTGGAGAAGATATTGTTCCTTATCCTCGTCAGATAAAGAGCCGACGTGGGATGAAG
ACGGAAAGTTTCAATCGGACATTTTCTTTATTAAGAGGACCAGCTACAAGCGATCGCGATCGCAGTGCCAAATTAATTTC
CTCTTTAGCTGCTAATTTAGCAACTCCAATCAAAGCACCAGCAGTTGGTAACGGAGCAGCTTCCAGCAATACATCTAAAT
CTTTCCTGATCGAGTTTTTATCTCGTACTGCTGATGCCAGGCTGAATCGTCGTGGGAAAAGAAAAAGGGTCGTTACCTAT
TCTCAAATGAACCAACAAGTTCGCAATATTCACAGAAGTGGTGGTAAAATTGTTAAGATAACTGAGTTAGTTTAA

Upstream 100 bases:

>100_bases
TTTAGCCAATTAAAAACTGCTATGGCTCCTTAAGTTTTAGAGAGCTGAGGATTTCTGTTTTTTTGTAATGTTTAAAAAAT
CATAATTTAAGGAGAAAAAT

Downstream 100 bases:

>100_bases
CTCCACTATTGGGAGGTTCAGAGCTTGGTACAACAAGAAACGTCTATGGGCGAGTCAAACCTTATTTGTAAAGCATTATG
GGGGATTCTTTATATACTTT

Product: phycobilisome linker polypeptide

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MGNLALSATLGLDAFEVEPLELRSNFTEDDLQTVIRAVYKQVLGNEYMMESQRLHSPEALLRNGSINVREFIRVVAKSPL
YQSLFFHSSSQNRFIELNFKHLLGRPPLDQAEISDHVLIYREQGYDAEIDSYLDSNDYINSFGEDIVPYPRQIKSRRGMK
TESFNRTFSLLRGPATSDRDRSAKLISSLAANLATPIKAPAVGNGAASSNTSKSFLIEFLSRTADARLNRRGKRKRVVTY
SQMNQQVRNIHRSGGKIVKITELV

Sequences:

>Translated_264_residues
MGNLALSATLGLDAFEVEPLELRSNFTEDDLQTVIRAVYKQVLGNEYMMESQRLHSPEALLRNGSINVREFIRVVAKSPL
YQSLFFHSSSQNRFIELNFKHLLGRPPLDQAEISDHVLIYREQGYDAEIDSYLDSNDYINSFGEDIVPYPRQIKSRRGMK
TESFNRTFSLLRGPATSDRDRSAKLISSLAANLATPIKAPAVGNGAASSNTSKSFLIEFLSRTADARLNRRGKRKRVVTY
SQMNQQVRNIHRSGGKIVKITELV
>Mature_263_residues
GNLALSATLGLDAFEVEPLELRSNFTEDDLQTVIRAVYKQVLGNEYMMESQRLHSPEALLRNGSINVREFIRVVAKSPLY
QSLFFHSSSQNRFIELNFKHLLGRPPLDQAEISDHVLIYREQGYDAEIDSYLDSNDYINSFGEDIVPYPRQIKSRRGMKT
ESFNRTFSLLRGPATSDRDRSAKLISSLAANLATPIKAPAVGNGAASSNTSKSFLIEFLSRTADARLNRRGKRKRVVTYS
QMNQQVRNIHRSGGKIVKITELV

Specific function: Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a d

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycocyanin (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- ProDom:   PD000852 [H]

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 29815; Mature: 29684

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNLALSATLGLDAFEVEPLELRSNFTEDDLQTVIRAVYKQVLGNEYMMESQRLHSPEAL
CCCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHH
LRNGSINVREFIRVVAKSPLYQSLFFHSSSQNRFIELNFKHLLGRPPLDQAEISDHVLIY
HHCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCHHHCCCCEEEE
REQGYDAEIDSYLDSNDYINSFGEDIVPYPRQIKSRRGMKTESFNRTFSLLRGPATSDRD
ECCCCCCHHHHHCCCCHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCH
RSAKLISSLAANLATPIKAPAVGNGAASSNTSKSFLIEFLSRTADARLNRRGKRKRVVTY
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
SQMNQQVRNIHRSGGKIVKITELV
HHHHHHHHHHHHCCCCEEEEEECC
>Mature Secondary Structure 
GNLALSATLGLDAFEVEPLELRSNFTEDDLQTVIRAVYKQVLGNEYMMESQRLHSPEAL
CCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHH
LRNGSINVREFIRVVAKSPLYQSLFFHSSSQNRFIELNFKHLLGRPPLDQAEISDHVLIY
HHCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCHHHCCCCEEEE
REQGYDAEIDSYLDSNDYINSFGEDIVPYPRQIKSRRGMKTESFNRTFSLLRGPATSDRD
ECCCCCCHHHHHCCCCHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCH
RSAKLISSLAANLATPIKAPAVGNGAASSNTSKSFLIEFLSRTADARLNRRGKRKRVVTY
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
SQMNQQVRNIHRSGGKIVKITELV
HHHHHHHHHHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]