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The map label for this gene is lss [H]

Identifier: 113474778

GI number: 113474778

Start: 1551310

End: 1552242

Strand: Direct

Name: lss [H]

Synonym: Tery_0986

Alternate gene names: 113474778

Gene position: 1551310-1552242 (Clockwise)

Preceding gene: 113474777

Following gene: 113474781

Centisome position: 20.02

GC content: 44.37

Gene sequence:

>933_bases
ATGAAACAAATGACAACCATTGAAACTTCCCAAATGAGTAATTATGATGATCGCATTATTGAAATTGAGGTGACAGGAGT
CTGTCGTCAAGATTTTAAACGGGTCAGTACTTACAAAAAGAAAGTTTCTCATAAGCGTATGAATGAAGCACTGCGAGAGA
TTTATTCTTTAGGAGGAAAAATTGTAAGCGTTACATTGTTAGGAGAATCAACAGCAACTCAGCCACCAGTTGAGACTTTA
GAGGAATCAACAGCAACTCAGCCACCAGTTGAGACTTTAGAGGAATCAACAGCAACTCAGCAGCCCGTTGAGACTTTAGA
GGAATCAACAGCAACTCAGCAGCCCGTTGAGACTTTAGAGGAATCAACAGCAACTCAGCCACCAGTTGAGACTTTAGAGG
AATCAACAGCAACTCAGCCACCAGTTGAGACTTTAGAGGAATCAACAGCAACTCAGCCACCAGTTGAGACTTTAGAGGAA
TCAACAGCAACTCAGCCACCAGTTGAGACTTTAGAGGAATCAACAGCAACTCAGCCACCAGTTGAGACTTCAGAGGAATC
AAAAGCAACTCAGCAGCCCGTTGAGACTTCGGAGGAATCAAAAGCAACTCAGCAGCCCGTTGAGACTTCAGAGGAATCAA
CAGCAACTCAGCAGCCCGTTGAGACTTCGGAGGAATCAAAAGCAACTCAGCAGCCCGTTGAGACTTCGGAGGAATCAACA
GCAACTCAGCAGCCCGTTGAGACTTCAGAGGAATCAACAGCAACTCAGCAGCCCGTTGAGACCGACGTCACATTGTCGAA
GAAATCACCAGCAAATCAGCAGCCCGTTGAGACCGACGTCACATTGTCGAAGAAATCACTTGCAAATAAGCAGCCAGTTA
AGAATAAGGGTAAAAGAAGAGGGAAGAAAAAAACAGCTAAAAAAGATCTTTAA

Upstream 100 bases:

>100_bases
TTTTTTTGCCTAAAACTATGAAAATATTATATAGTAAGCATTTGAGTATGTTACATTTTCACATACCAAACAACTCTATT
TTTGTTAGAGGAACTTAATA

Downstream 100 bases:

>100_bases
ATAATTGGTCAACTATTTGTGTGTTTATCCCTAAATTCACTTAAGTCTCAGTCTTGGCCTTTAAACTAAGAAGCTAATAA
ATTTAATATTTGTCTTTGAC

Product: CpcD phycobilisome linker-like

Products: NA

Alternate protein names: Glycyl-glycine endopeptidase [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MKQMTTIETSQMSNYDDRIIEIEVTGVCRQDFKRVSTYKKKVSHKRMNEALREIYSLGGKIVSVTLLGESTATQPPVETL
EESTATQPPVETLEESTATQQPVETLEESTATQQPVETLEESTATQPPVETLEESTATQPPVETLEESTATQPPVETLEE
STATQPPVETLEESTATQPPVETSEESKATQQPVETSEESKATQQPVETSEESTATQQPVETSEESKATQQPVETSEEST
ATQQPVETSEESTATQQPVETDVTLSKKSPANQQPVETDVTLSKKSLANKQPVKNKGKRRGKKKTAKKDL

Sequences:

>Translated_310_residues
MKQMTTIETSQMSNYDDRIIEIEVTGVCRQDFKRVSTYKKKVSHKRMNEALREIYSLGGKIVSVTLLGESTATQPPVETL
EESTATQPPVETLEESTATQQPVETLEESTATQQPVETLEESTATQPPVETLEESTATQPPVETLEESTATQPPVETLEE
STATQPPVETLEESTATQPPVETSEESKATQQPVETSEESKATQQPVETSEESTATQQPVETSEESKATQQPVETSEEST
ATQQPVETSEESTATQQPVETDVTLSKKSPANQQPVETDVTLSKKSLANKQPVKNKGKRRGKKKTAKKDL
>Mature_310_residues
MKQMTTIETSQMSNYDDRIIEIEVTGVCRQDFKRVSTYKKKVSHKRMNEALREIYSLGGKIVSVTLLGESTATQPPVETL
EESTATQPPVETLEESTATQQPVETLEESTATQQPVETLEESTATQPPVETLEESTATQPPVETLEESTATQPPVETLEE
STATQPPVETLEESTATQPPVETSEESKATQQPVETSEESKATQQPVETSEESTATQQPVETSEESKATQQPVETSEEST
ATQQPVETSEESTATQQPVETDVTLSKKSPANQQPVETDVTLSKKSLANKQPVKNKGKRRGKKKTAKKDL

Specific function: Lyses staphylococcal cells by hydrolyzing the polyglycine interpeptide bridges of the peptidoglycan [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR003646
- InterPro:   IPR013667 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF08460 SH3_5 [H]

EC number: =3.4.24.75 [H]

Molecular weight: Translated: 33939; Mature: 33939

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQMTTIETSQMSNYDDRIIEIEVTGVCRQDFKRVSTYKKKVSHKRMNEALREIYSLGGK
CCCCCCCHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
IVSVTLLGESTATQPPVETLEESTATQPPVETLEESTATQQPVETLEESTATQQPVETLE
EEEEEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESTATQPPVETLEESTATQPPVETLEESTATQPPVETLEESTATQPPVETLEESTATQPP
HHCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCC
VETSEESKATQQPVETSEESKATQQPVETSEESTATQQPVETSEESKATQQPVETSEEST
CCCCHHHHHHHCCHHCCHHHHHHHCCHHCCHHHHHHHCCCCCCHHHHHHHCCHHCCHHHH
ATQQPVETSEESTATQQPVETDVTLSKKSPANQQPVETDVTLSKKSLANKQPVKNKGKRR
HHHCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHH
GKKKTAKKDL
HHHHHHHCCC
>Mature Secondary Structure
MKQMTTIETSQMSNYDDRIIEIEVTGVCRQDFKRVSTYKKKVSHKRMNEALREIYSLGGK
CCCCCCCHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
IVSVTLLGESTATQPPVETLEESTATQPPVETLEESTATQQPVETLEESTATQQPVETLE
EEEEEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESTATQPPVETLEESTATQPPVETLEESTATQPPVETLEESTATQPPVETLEESTATQPP
HHCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCC
VETSEESKATQQPVETSEESKATQQPVETSEESTATQQPVETSEESKATQQPVETSEEST
CCCCHHHHHHHCCHHCCHHHHHHHCCHHCCHHHHHHHCCCCCCHHHHHHHCCHHCCHHHH
ATQQPVETSEESTATQQPVETDVTLSKKSPANQQPVETDVTLSKKSLANKQPVKNKGKRR
HHHCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHH
GKKKTAKKDL
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3547405; 9106216 [H]