| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113474675
Identifier: 113474675
GI number: 113474675
Start: 1354217
End: 1354837
Strand: Direct
Name: 113474675
Synonym: Tery_0855
Alternate gene names: NA
Gene position: 1354217-1354837 (Clockwise)
Preceding gene: 113474674
Following gene: 113474676
Centisome position: 17.47
GC content: 34.46
Gene sequence:
>621_bases TTGATTACAGCTATTACTCCTTTTATTAAGTCTGAATCAGAACCATCAACGACACCGATACCTACTCCATCCTCGATGGT TAAGGAAGTGTCTTCTTTAGAATCTAGAATTAGATTCTTTTGTGGAACTGGTGAGTATCGAGGTAAGAATATTCCGGCAA TAATTGTAGAAAATACTCAATTAAATGAAGAAATAATTGTTATTTTATGGAAGTTAGACAATTATTATTTTGGTAAAAAG TATCCACCAAAAAAGCGATGCGAAATGGTGTCCCAACGGTTCCAGAATATATATGATAGAGGCGGGTTAAAATATATTGT TCCTACCTTAGAAACTTGGGTTCCTAATCAGGAAATTCCGGTAGTATGTGGAGTTAAGCAAATAATGACTTCTTGTAATA ATGAGGATTTACTTTTCACTTTGCAGTCAAATGATGATCCAAATTTAGTGGTGCAAGATTTGATGAACTGCCGGAATTTT CCTCGTAAAAATCCGCCAATATTAAGAGGGGAAGAACCTCCTAATACTTTTGCTGAAGGTAAACGAGTTTATTACGATTT TTCTAATGTTTTGAATAGGTGGCAACTAGAGGAATATTCTCAAGAAAAGCCTGCATTTTAA
Upstream 100 bases:
>100_bases TATCCTTTTACAATTATGAGCAATAATCAGAAAAAAATCCTGGACTAAATTCGCTGGTTTACTAGGTGGAGTTGCTGGTG TATTTGGTGGAGTTGCTGCT
Downstream 100 bases:
>100_bases AGTTTAATTCCATATACTGTCTGAAATAGTTTTATTGCGGATGTCGCCATAAAAATTTTTACTTATAAGGTTTTATTGCG TATGCCGCAATAGGAATTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 206; Mature: 206
Protein sequence:
>206_residues MITAITPFIKSESEPSTTPIPTPSSMVKEVSSLESRIRFFCGTGEYRGKNIPAIIVENTQLNEEIIVILWKLDNYYFGKK YPPKKRCEMVSQRFQNIYDRGGLKYIVPTLETWVPNQEIPVVCGVKQIMTSCNNEDLLFTLQSNDDPNLVVQDLMNCRNF PRKNPPILRGEEPPNTFAEGKRVYYDFSNVLNRWQLEEYSQEKPAF
Sequences:
>Translated_206_residues MITAITPFIKSESEPSTTPIPTPSSMVKEVSSLESRIRFFCGTGEYRGKNIPAIIVENTQLNEEIIVILWKLDNYYFGKK YPPKKRCEMVSQRFQNIYDRGGLKYIVPTLETWVPNQEIPVVCGVKQIMTSCNNEDLLFTLQSNDDPNLVVQDLMNCRNF PRKNPPILRGEEPPNTFAEGKRVYYDFSNVLNRWQLEEYSQEKPAF >Mature_206_residues MITAITPFIKSESEPSTTPIPTPSSMVKEVSSLESRIRFFCGTGEYRGKNIPAIIVENTQLNEEIIVILWKLDNYYFGKK YPPKKRCEMVSQRFQNIYDRGGLKYIVPTLETWVPNQEIPVVCGVKQIMTSCNNEDLLFTLQSNDDPNLVVQDLMNCRNF PRKNPPILRGEEPPNTFAEGKRVYYDFSNVLNRWQLEEYSQEKPAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23856; Mature: 23856
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITAITPFIKSESEPSTTPIPTPSSMVKEVSSLESRIRFFCGTGEYRGKNIPAIIVENTQ CCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCC LNEEIIVILWKLDNYYFGKKYPPKKRCEMVSQRFQNIYDRGGLKYIVPTLETWVPNQEIP CCCEEEEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCCCCC VVCGVKQIMTSCNNEDLLFTLQSNDDPNLVVQDLMNCRNFPRKNPPILRGEEPPNTFAEG EEECHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCHHHCC KRVYYDFSNVLNRWQLEEYSQEKPAF CEEEEEHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MITAITPFIKSESEPSTTPIPTPSSMVKEVSSLESRIRFFCGTGEYRGKNIPAIIVENTQ CCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCC LNEEIIVILWKLDNYYFGKKYPPKKRCEMVSQRFQNIYDRGGLKYIVPTLETWVPNQEIP CCCEEEEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCCCCC VVCGVKQIMTSCNNEDLLFTLQSNDDPNLVVQDLMNCRNFPRKNPPILRGEEPPNTFAEG EEECHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCHHHCC KRVYYDFSNVLNRWQLEEYSQEKPAF CEEEEEHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA